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CPLX1
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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CPLX1
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:180.9 nTPM
FANTOM5:99.5 Scaled Tags Per Million
Pig:100.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA071191Antibody HPA074390
Glial cells LowLow
Neuronal cells MediumMedium





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

180.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 180.9
Samples: 300

Max nTPM: 485.1
Min nTPM: 9.9
Std nTPM: 85.4
Median nTPM: 190.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 485.1
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 416.2
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 392.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 385.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 370.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 362.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 358.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 354.2
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 346.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 346.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 340.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 339.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 332.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 327.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 322.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 316.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 315.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 308.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 299.9
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 298.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 297.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 296.0
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 292.7
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 291.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 291.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 288.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 288.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 287.8
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 286.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 286.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 284.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 284.7
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 284.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 281.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 279.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 279.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 276.6
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 273.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 272.4
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 272.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 271.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 271.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 271.0
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 270.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 269.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 269.5
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 269.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 268.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 268.6
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 268.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 262.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 261.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 261.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 259.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 259.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 258.4
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 257.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 257.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 256.7
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 254.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 254.3
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 253.7
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 250.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 248.7
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 246.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 245.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 243.8
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 243.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 240.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 239.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 239.8
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 238.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 237.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 236.7
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 235.7
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 235.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 233.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 233.6
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 233.3
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 232.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 232.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 232.2
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 229.8
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 229.7
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 229.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 228.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 228.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 228.2
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 227.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 226.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 226.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 226.3
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 225.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 225.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 224.9
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 224.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 223.7
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 222.9
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 222.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 222.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 221.7
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 220.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 218.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 217.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 217.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 216.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 216.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 216.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 214.4
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 214.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 213.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 212.3
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 211.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 211.0
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 208.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 208.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 208.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 208.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 208.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 207.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 207.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 207.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 207.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 206.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 206.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 206.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 205.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 204.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 204.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 203.3
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 203.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 202.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 202.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 202.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 201.9
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 201.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 200.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 199.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 196.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 195.3
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 195.0
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 193.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 193.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 193.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 191.8
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 190.8
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 190.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 190.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 190.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 190.3
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 189.8
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 189.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 187.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 187.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 186.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 186.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 186.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 185.6
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 184.7
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 183.2
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 182.5
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 182.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 180.7
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 180.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 180.0
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 176.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 175.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 174.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 174.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 172.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 171.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 168.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 164.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 164.3
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 163.2
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 162.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 162.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 161.1
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 160.1
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 158.7
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 156.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 156.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 155.8
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 155.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 154.9
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 154.8
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 153.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 151.1
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 150.0
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 149.2
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 148.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 147.9
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 146.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 146.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 145.2
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 143.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 142.0
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 141.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 139.0
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 138.5
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 135.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 135.5
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 134.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 134.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 132.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 132.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 131.5
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 129.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 129.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 125.8
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 122.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 122.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 121.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 121.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 120.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 119.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 119.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 118.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 117.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 117.8
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 117.1
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 116.8
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 116.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 115.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 112.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 109.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 108.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 107.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 107.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 106.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 106.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 105.2
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 103.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 100.4
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 99.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 99.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 96.7
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 96.0
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 94.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 93.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 93.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 92.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 92.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 92.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 91.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 91.3
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 91.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 88.4
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 88.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 86.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 86.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 85.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 85.7
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 84.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 83.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 82.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 81.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 80.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 79.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 79.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 78.6
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 78.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 77.9
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 75.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 75.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 73.9
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 73.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 73.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 73.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 73.1
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 65.5
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 65.2
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 64.7
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 64.1
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 58.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 58.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 57.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 53.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 51.1
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 50.5
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 49.5
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 49.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 48.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 47.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 45.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 44.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 40.7
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 37.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 36.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 34.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 33.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 33.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 32.4
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 29.1
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 26.8
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 26.7
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 23.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 22.0
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 17.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 9.9
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

99.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 99.5
FF:10164-103B2 76 years, female 99.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

100.8
Pig sample Sample description nTPM
Caudate
nTPM: 100.8
Samples: 4

Max nTPM: 121.1
Min nTPM: 71.7
Sample A Female 71.7
Sample B Female 108.0
Sample C Male 121.1
Sample D Male 102.3

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