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  • CPLX1
TISSUE PRIMARY DATA AMYGDALA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Amygdala
Tissue methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:75.7 nTPM
HPA Brain:187.2 nTPM
GTEx:75.7 nTPM
FANTOM5:61.4 Scaled Tags Per Million
Pig:79.6 nTPM
Mouse:425.2 nTPM
Allen mouse:22.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

187.2
Sample id Sample description nTPM
Amygdala
nTPM: 187.2
2814 Male, age 76, right hemisphere 485.3
2695 Female, age 67, right hemisphere 208.1
1987 Female, age 91, left hemisphere 87.1
2517 Female, age 94, left hemisphere 78.3
2514 Male, age 75, right hemisphere 77.2
Basal amygdala
nTPM: 144.8
1955 Male, age 76, both hemispheres 191.8
2110 Male, age 80, left hemisphere 150.7
2243 Female, age 91, right hemisphere 146.7
2827 Female, age 67, right hemisphere 131.2
2609 Male, age 75, right hemisphere 129.7
2685 Female, age 94, left hemisphere 119.0
Central amygdala
nTPM: 180.8
1905 Male, age 76, both hemispheres 463.5
2826 Female, age 94, left hemisphere 139.9
2701 Female, age 91, right hemisphere 105.0
2239 Male, age 80, left hemisphere 102.3
2515 Male, age 75, right hemisphere 93.5
Corticomedial amygdala
nTPM: 129.7
2829 Male, age 80, left hemisphere 167.1
2535 Female, age 67, right hemisphere 158.0
2240 Male, age 76, both hemispheres 154.5
2429 Female, age 94, left hemisphere 108.4
2428 Male, age 75, right hemisphere 102.1
2242 Female, age 91, right hemisphere 87.9
Lateral amygdala
nTPM: 168.4
1883 Male, age 76, both hemispheres 468.5
2534 Female, age 94, left hemisphere 158.2
2830 Female, age 67, right hemisphere 122.2
2256 Male, age 80, left hemisphere 95.5
2255 Female, age 91, right hemisphere 93.1
2516 Male, age 75, right hemisphere 72.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

75.7
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 75.7
Samples: 181

Max nTPM: 298.4
Min nTPM: 15.3
Std nTPM: 40.4
Median nTPM: 70.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 298.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 254.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 220.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 196.0
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 183.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 178.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 148.4
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 147.2
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 138.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 135.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 131.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 128.1
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 127.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 126.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 125.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 120.6
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 117.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 116.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 114.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 113.5
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 112.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 110.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 110.3
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 109.3
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 107.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 106.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 105.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 105.3
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 105.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 104.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 102.9
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 102.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 102.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 101.6
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 101.1
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 100.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 99.8
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 98.1
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 97.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 97.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 97.3
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 96.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 96.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 95.8
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 95.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 94.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 94.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 94.1
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 93.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 92.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 91.3
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 91.2
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 90.7
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 90.6
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 90.3
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 90.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 88.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 87.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 85.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 85.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 85.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 85.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 85.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 84.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 84.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 83.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 83.9
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 83.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 83.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 83.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 83.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 82.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 81.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 81.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 81.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 80.1
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 78.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 78.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 78.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 77.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 74.8
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 73.4
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 73.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 73.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72.7
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 71.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 71.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 70.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 70.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 70.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 69.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 68.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 68.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 67.8
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 67.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 67.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 67.1
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 67.0
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 66.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 65.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 64.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 63.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 63.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 62.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 62.6
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 62.3
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 62.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 62.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 61.1
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 60.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 60.6
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 60.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 60.1
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 59.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 57.1
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 56.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 56.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 56.2
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 56.0
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 54.5
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 54.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 54.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 53.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 53.0
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 52.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 52.5
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 52.5
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 52.4
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 52.4
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 52.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 51.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 50.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 50.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 49.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 49.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 49.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 48.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 47.8
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 47.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 46.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 46.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 45.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 44.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 43.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 43.3
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 42.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 42.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 42.3
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 40.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 40.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 40.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 39.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 38.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 38.5
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 36.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 35.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 35.5
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 35.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 33.1
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 33.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 32.0
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 31.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 29.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 28.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 27.6
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 27.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 26.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 26.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 25.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 25.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 25.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 25.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 23.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 22.5
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 22.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 22.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 21.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 20.5
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 15.3
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

61.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 61.4
FF:10151-102I7 76 years, female 61.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

79.6
Pig sample Sample description nTPM
Amygdala
nTPM: 79.6
Samples: 4

Max nTPM: 120.5
Min nTPM: 54.1
Sample A Female 120.5
Sample B Female 54.1
Sample C Male 75.5
Sample D Male 68.4

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

425.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 425.2
Samples: 4

Max nTPM: 586.9
Min nTPM: 356.3
Sample A Male 386.6
Sample B Male 356.3
Sample C Female 586.9
Sample D Female 371.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

22.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 22.0
68193003 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 22.0
67752308 Antisense, RP_040922_01_D06, Mouse strain C57BL/6J (56 days, male) 14.2

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