MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:37.8 nTPM
HPA Brain:26.3 nTPM
GTEx:37.8 nTPM
FANTOM5:70.6 Scaled Tags Per Million
Pig:80.0 nTPM
Mouse:202.7 nTPM
Allen mouse:10.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 26.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 21.5
2019 Male, age 18, unknown 28.2
2586 Male, age 75, left hemisphere 24.1
2411 Female, age 72, unknown 23.7
2219 Male, age 76, both hemispheres 22.2
1827 Male, age 72, unknown 22.0
2666 Male, age 74, left hemisphere 20.1
1833 Male, age 53, unknown 19.8
1830 Male, age 51, unknown 19.0
1870 Female, age 42, unknown 18.5
2828 Female, age 72, unknown 17.9
Dorsal raphe nucleus
nTPM: 21.6
1828 Male, age 53, unknown 24.7
2298 Female, age 72, unknown 24.1
2047 Male, age 72, unknown 22.3
2750 Male, age 76, both hemispheres 20.0
2016 Female, age 72, unknown 17.1
Inferior colliculus
nTPM: 21.9
2097 Female, age 72, unknown 26.2
1890 Male, age 53, unknown 22.1
1848 Female, age 42, unknown 20.9
2849 Male, age 72, unknown 18.5
Median raphe nucleus
nTPM: 19.3
2220 Male, age 76, midline 19.3
Periaquaductal grey, anterior
nTPM: 21.6
1947 Male, age 18, unknown 21.8
2502 Female, age 75, unknown 21.8
1795 Male, age 51, unknown 21.2
Periaquaductal grey, dorsal
nTPM: 19.0
2464 Female, age 72, unknown 19.6
1840 Male, age 53, unknown 19.3
2850 Male, age 76, both hemispheres 18.6
1831 Male, age 72, unknown 18.5
Periaquaductal grey, lateral
nTPM: 17.5
2272 Male, age 74, both hemispheres 19.2
2140 Male, age 76, both hemispheres 16.8
2053 Male, age 18, unknown 16.4
Pretectal area
nTPM: 24.2
1817 Female, age 42, unknown 32.6
2007 Male, age 72, unknown 32.6
1816 Male, age 51, unknown 29.3
1944 Female, age 72, unknown 28.9
1815 Male, age 53, unknown 26.9
2667 Female, age 75, unknown 23.7
2273 Male, age 74, both hemispheres 21.2
2224 Female, age 72, unknown 20.7
2316 Male, age 76, right hemisphere 17.4
2825 Male, age 18, unknown 17.4
2407 Male, age 75, both hemispheres 15.6
Red nucleus
nTPM: 21.9
1821 Female, age 72, unknown 27.5
2785 Male, age 18, unknown 26.6
2588 Male, age 74, left hemisphere 23.0
2725 Female, age 75, unknown 23.0
1954 Female, age 42, unknown 22.5
2503 Female, age 72, unknown 22.2
1904 Male, age 53, unknown 20.4
1865 Male, age 51, unknown 20.3
2227 Male, age 72, unknown 19.8
2769 Male, age 72, unknown 19.5
2823 Male, age 76, right hemisphere 19.3
2584 Male, age 75, left hemisphere 18.3
Substantia nigra
nTPM: 26.3
1916 Female, age 42, unknown 34.0
2241 Male, age 72, unknown 31.6
1851 Male, age 51, unknown 29.9
1889 Female, age 72, unknown 28.7
2409 Female, age 72, unknown 26.2
1941 Male, age 53, unknown 25.8
2665 Male, age 74, both hemispheres 24.9
2590 Female, age 75, unknown 21.8
2699 Male, age 18, unknown 21.3
2583 Male, age 75, right hemisphere 19.3
Superior colliculus
nTPM: 20.3
2087 Female, age 72, unknown 24.1
2668 Female, age 75, unknown 22.4
2261 Male, age 18, unknown 21.7
1796 Male, age 53, unknown 21.5
1895 Male, age 76, right hemisphere 20.7
2587 Male, age 74, left hemisphere 20.3
1839 Male, age 51, unknown 20.0
2664 Male, age 75, both hemispheres 19.2
1913 Female, age 42, unknown 17.0
1995 Male, age 72, unknown 16.4
Ventral tegmental area
nTPM: 23.0
2410 Female, age 72, unknown 28.4
1915 Female, age 42, unknown 26.8
2218 Male, age 76, both hemispheres 24.2
2223 Female, age 72, unknown 21.3
1942 Male, age 51, unknown 19.4
2021 Male, age 53, unknown 18.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 37.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.8
Samples: 183

Max nTPM: 65.6
Min nTPM: 17.4
Std nTPM: 9.7
Median nTPM: 36.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 65.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 63.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 63.3
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 62.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 61.3
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 59.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 57.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 57.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 56.6
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 55.7
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 55.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 70.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 70.6
FF:10158-103A5 76 years, female 70.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 80.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 69.8
Samples: 4

Max nTPM: 96.5
Min nTPM: 42.5
Sample A Female 96.5
Sample B Female 55.9
Sample C Male 84.4
Sample D Male 42.5
Midbrain
nTPM: 78.6
Samples: 4

Max nTPM: 114.1
Min nTPM: 52.2
Sample A Female 52.2
Sample B Female 68.1
Sample C Male 114.1
Sample D Male 79.8
Periaqueductal gray
nTPM: 56.8
Samples: 3

Max nTPM: 63.2
Min nTPM: 50.1
Sample B Female 57.2
Sample C Male 63.2
Sample D Male 50.1
Superior colliculi
nTPM: 80.0
Samples: 4

Max nTPM: 102.4
Min nTPM: 58.7
Sample A Female 84.9
Sample B Female 58.7
Sample C Male 102.4
Sample D Male 74.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 202.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 202.7
Samples: 4

Max nTPM: 207.3
Min nTPM: 197.0
Sample A Male 207.3
Sample B Male 200.3
Sample C Female 197.0
Sample D Female 206.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 10.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.4
70565401 Antisense, RP_050623_04_H03, Mouse strain C57BL/6J (56 days, male) 10.4
71924399 Antisense, RP_050623_04_H03, Mouse strain C57BL/6J (56 days, male) 8.2

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