MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:13.7 nTPM
HPA Brain:53.6 nTPM
GTEx:13.7 nTPM
FANTOM5:53.4 Scaled Tags Per Million
Pig:58.4 nTPM
Mouse:148.6 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 53.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.4
1827 Male, age 72, unknown 45.9
2411 Female, age 72, unknown 44.8
2586 Male, age 75, left hemisphere 43.6
2666 Male, age 74, left hemisphere 42.4
2019 Male, age 18, unknown 39.9
1870 Female, age 42, unknown 39.8
2828 Female, age 72, unknown 33.4
1833 Male, age 53, unknown 33.0
1830 Male, age 51, unknown 30.8
2219 Male, age 76, both hemispheres 30.1
Dorsal raphe nucleus
nTPM: 46.2
2298 Female, age 72, unknown 67.3
2047 Male, age 72, unknown 48.8
2750 Male, age 76, both hemispheres 44.6
1828 Male, age 53, unknown 36.8
2016 Female, age 72, unknown 33.6
Inferior colliculus
nTPM: 45.6
2097 Female, age 72, unknown 64.3
1890 Male, age 53, unknown 41.9
2849 Male, age 72, unknown 38.5
1848 Female, age 42, unknown 37.8
Median raphe nucleus
nTPM: 53.6
2220 Male, age 76, midline 53.6
Periaquaductal grey, anterior
nTPM: 36.6
1795 Male, age 51, unknown 41.0
2502 Female, age 75, unknown 37.5
1947 Male, age 18, unknown 31.4
Periaquaductal grey, dorsal
nTPM: 41.6
1840 Male, age 53, unknown 53.1
2850 Male, age 76, both hemispheres 39.0
2464 Female, age 72, unknown 38.7
1831 Male, age 72, unknown 35.8
Periaquaductal grey, lateral
nTPM: 33.4
2140 Male, age 76, both hemispheres 36.0
2053 Male, age 18, unknown 34.7
2272 Male, age 74, both hemispheres 29.7
Pretectal area
nTPM: 46.6
1816 Male, age 51, unknown 67.9
2007 Male, age 72, unknown 64.3
1817 Female, age 42, unknown 55.4
1944 Female, age 72, unknown 55.3
2224 Female, age 72, unknown 51.3
1815 Male, age 53, unknown 49.7
2825 Male, age 18, unknown 40.6
2667 Female, age 75, unknown 38.0
2407 Male, age 75, both hemispheres 33.1
2273 Male, age 74, both hemispheres 31.9
2316 Male, age 76, right hemisphere 25.1
Red nucleus
nTPM: 29.8
2785 Male, age 18, unknown 41.6
2584 Male, age 75, left hemisphere 38.3
2725 Female, age 75, unknown 36.5
1821 Female, age 72, unknown 31.6
2588 Male, age 74, left hemisphere 30.4
2503 Female, age 72, unknown 29.7
2769 Male, age 72, unknown 26.4
1954 Female, age 42, unknown 25.9
1904 Male, age 53, unknown 25.6
2227 Male, age 72, unknown 24.5
2823 Male, age 76, right hemisphere 23.9
1865 Male, age 51, unknown 22.8
Substantia nigra
nTPM: 40.1
1889 Female, age 72, unknown 50.4
2665 Male, age 74, both hemispheres 45.5
1916 Female, age 42, unknown 43.7
2241 Male, age 72, unknown 42.3
2583 Male, age 75, right hemisphere 41.6
1941 Male, age 53, unknown 40.5
1851 Male, age 51, unknown 39.8
2590 Female, age 75, unknown 39.2
2409 Female, age 72, unknown 32.4
2699 Male, age 18, unknown 26.0
Superior colliculus
nTPM: 38.8
2087 Female, age 72, unknown 49.4
2261 Male, age 18, unknown 47.7
1796 Male, age 53, unknown 46.9
2587 Male, age 74, left hemisphere 40.3
1839 Male, age 51, unknown 37.4
2668 Female, age 75, unknown 35.4
1913 Female, age 42, unknown 33.8
1995 Male, age 72, unknown 33.0
2664 Male, age 75, both hemispheres 32.2
1895 Male, age 76, right hemisphere 31.6
Ventral tegmental area
nTPM: 41.1
2223 Female, age 72, unknown 49.1
2410 Female, age 72, unknown 42.2
2218 Male, age 76, both hemispheres 39.5
1915 Female, age 42, unknown 39.0
2021 Male, age 53, unknown 38.5
1942 Male, age 51, unknown 38.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 13.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 13.7
Samples: 183

Max nTPM: 78.5
Min nTPM: 2.7
Std nTPM: 10.2
Median nTPM: 11.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 78.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 75.4
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 65.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 37.9
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 34.0
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 32.6
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 28.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 27.5
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 27.5
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 27.0
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 26.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 53.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 53.4
FF:10158-103A5 76 years, female 53.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.8
Samples: 4

Max nTPM: 43.8
Min nTPM: 16.2
Sample A Female 43.8
Sample B Female 28.1
Sample C Male 42.9
Sample D Male 16.2
Midbrain
nTPM: 58.4
Samples: 4

Max nTPM: 128.7
Min nTPM: 29.4
Sample A Female 29.4
Sample B Female 29.6
Sample C Male 128.7
Sample D Male 45.8
Periaqueductal gray
nTPM: 29.0
Samples: 3

Max nTPM: 37.2
Min nTPM: 24.2
Sample B Female 25.5
Sample C Male 37.2
Sample D Male 24.2
Superior colliculi
nTPM: 58.0
Samples: 4

Max nTPM: 103.8
Min nTPM: 39.4
Sample A Female 44.7
Sample B Female 44.0
Sample C Male 103.8
Sample D Male 39.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 148.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 148.6
Samples: 4

Max nTPM: 150.7
Min nTPM: 146.3
Sample A Male 146.3
Sample B Male 148.9
Sample C Female 148.4
Sample D Female 150.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
71381076 Antisense, RP_050503_04_H03, Mouse strain C57BL/6J (56 days, male) 7.5

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