MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:40.5 nTPM
GTEx:24.3 nTPM
FANTOM5:12.1 Scaled Tags Per Million
Pig:10.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 40.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 33.2
1827 Male, age 72, unknown 39.4
2411 Female, age 72, unknown 36.1
2828 Female, age 72, unknown 35.8
2586 Male, age 75, left hemisphere 35.6
2019 Male, age 18, unknown 34.0
1870 Female, age 42, unknown 32.2
2219 Male, age 76, both hemispheres 30.5
2666 Male, age 74, left hemisphere 30.0
1833 Male, age 53, unknown 29.5
1830 Male, age 51, unknown 28.6
Dorsal raphe nucleus
nTPM: 36.8
2298 Female, age 72, unknown 46.4
2047 Male, age 72, unknown 37.2
2750 Male, age 76, both hemispheres 36.5
1828 Male, age 53, unknown 32.0
2016 Female, age 72, unknown 31.9
Inferior colliculus
nTPM: 30.1
2097 Female, age 72, unknown 33.2
1848 Female, age 42, unknown 30.6
2849 Male, age 72, unknown 30.0
1890 Male, age 53, unknown 26.7
Median raphe nucleus
nTPM: 39.4
2220 Male, age 76, midline 39.4
Periaquaductal grey, anterior
nTPM: 40.5
1795 Male, age 51, unknown 41.9
1947 Male, age 18, unknown 41.4
2502 Female, age 75, unknown 38.1
Periaquaductal grey, dorsal
nTPM: 31.4
1840 Male, age 53, unknown 33.4
2464 Female, age 72, unknown 32.4
2850 Male, age 76, both hemispheres 31.5
1831 Male, age 72, unknown 28.2
Periaquaductal grey, lateral
nTPM: 32.9
2272 Male, age 74, both hemispheres 35.4
2140 Male, age 76, both hemispheres 31.9
2053 Male, age 18, unknown 31.4
Pretectal area
nTPM: 35.5
2667 Female, age 75, unknown 40.0
2007 Male, age 72, unknown 39.9
1816 Male, age 51, unknown 38.1
1815 Male, age 53, unknown 36.6
2224 Female, age 72, unknown 36.3
2273 Male, age 74, both hemispheres 36.1
1817 Female, age 42, unknown 34.6
2407 Male, age 75, both hemispheres 33.4
2825 Male, age 18, unknown 33.0
1944 Female, age 72, unknown 31.9
2316 Male, age 76, right hemisphere 30.7
Red nucleus
nTPM: 31.7
1821 Female, age 72, unknown 36.8
1954 Female, age 42, unknown 34.0
2503 Female, age 72, unknown 32.6
2785 Male, age 18, unknown 32.5
2769 Male, age 72, unknown 31.7
2588 Male, age 74, left hemisphere 31.6
1904 Male, age 53, unknown 31.4
2227 Male, age 72, unknown 31.4
2725 Female, age 75, unknown 30.7
1865 Male, age 51, unknown 30.0
2584 Male, age 75, left hemisphere 28.9
2823 Male, age 76, right hemisphere 28.4
Substantia nigra
nTPM: 35.0
1916 Female, age 42, unknown 44.2
1941 Male, age 53, unknown 41.4
1851 Male, age 51, unknown 40.0
1889 Female, age 72, unknown 35.0
2665 Male, age 74, both hemispheres 33.3
2590 Female, age 75, unknown 33.1
2241 Male, age 72, unknown 32.9
2583 Male, age 75, right hemisphere 30.6
2699 Male, age 18, unknown 30.2
2409 Female, age 72, unknown 29.9
Superior colliculus
nTPM: 31.9
1796 Male, age 53, unknown 40.1
2261 Male, age 18, unknown 37.7
2664 Male, age 75, both hemispheres 34.0
2668 Female, age 75, unknown 32.1
1913 Female, age 42, unknown 30.1
1839 Male, age 51, unknown 29.8
1895 Male, age 76, right hemisphere 29.6
2087 Female, age 72, unknown 29.5
2587 Male, age 74, left hemisphere 28.9
1995 Male, age 72, unknown 27.2
Ventral tegmental area
nTPM: 34.2
2218 Male, age 76, both hemispheres 38.0
1915 Female, age 42, unknown 36.1
2410 Female, age 72, unknown 34.8
1942 Male, age 51, unknown 34.3
2223 Female, age 72, unknown 32.4
2021 Male, age 53, unknown 29.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 183

Max nTPM: 65.9
Min nTPM: 9.0
Std nTPM: 7.3
Median nTPM: 23.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 65.9
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 53.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 48.8
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 42.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 41.6
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 40.9
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 37.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 36.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 35.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 34.9
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 34.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.1
FF:10158-103A5 76 years, female 12.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 10.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 9.8
Samples: 4

Max nTPM: 11.5
Min nTPM: 8.0
Sample A Female 10.2
Sample B Female 8.0
Sample C Male 11.5
Sample D Male 9.4
Midbrain
nTPM: 10.3
Samples: 4

Max nTPM: 13.5
Min nTPM: 6.6
Sample A Female 11.8
Sample B Female 6.6
Sample C Male 13.5
Sample D Male 9.3
Periaqueductal gray
nTPM: 8.5
Samples: 3

Max nTPM: 10.6
Min nTPM: 6.8
Sample B Female 6.8
Sample C Male 10.6
Sample D Male 8.0
Superior colliculi
nTPM: 10.2
Samples: 4

Max nTPM: 10.8
Min nTPM: 9.5
Sample A Female 10.7
Sample B Female 9.5
Sample C Male 10.8
Sample D Male 9.6

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