We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
PRELID1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • PRELID1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:84.8 nTPM
HPA Brain:36.4 nTPM
GTEx:84.8 nTPM
FANTOM5:37.6 Scaled Tags Per Million
Pig:15.9 nTPM
Mouse:35.9 nTPM
Allen mouse:16.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

36.4
Sample id Sample description nTPM
Amygdala
nTPM: 36.4
2814 Male, age 76, right hemisphere 41.9
2695 Female, age 67, right hemisphere 41.0
2514 Male, age 75, right hemisphere 35.1
2517 Female, age 94, left hemisphere 32.2
1987 Female, age 91, left hemisphere 32.0
Basal amygdala
nTPM: 33.1
2609 Male, age 75, right hemisphere 44.5
2110 Male, age 80, left hemisphere 33.9
2827 Female, age 67, right hemisphere 32.7
2685 Female, age 94, left hemisphere 29.5
2243 Female, age 91, right hemisphere 29.4
1955 Male, age 76, both hemispheres 28.8
Central amygdala
nTPM: 35.6
2826 Female, age 94, left hemisphere 43.9
2515 Male, age 75, right hemisphere 43.1
1905 Male, age 76, both hemispheres 38.4
2239 Male, age 80, left hemisphere 27.0
2701 Female, age 91, right hemisphere 25.5
Corticomedial amygdala
nTPM: 30.9
2428 Male, age 75, right hemisphere 39.9
2829 Male, age 80, left hemisphere 37.0
2429 Female, age 94, left hemisphere 28.6
2242 Female, age 91, right hemisphere 27.4
2240 Male, age 76, both hemispheres 27.0
2535 Female, age 67, right hemisphere 25.3
Lateral amygdala
nTPM: 33.5
2534 Female, age 94, left hemisphere 40.1
1883 Male, age 76, both hemispheres 37.3
2516 Male, age 75, right hemisphere 36.9
2830 Female, age 67, right hemisphere 31.4
2256 Male, age 80, left hemisphere 29.2
2255 Female, age 91, right hemisphere 26.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 84.8
Samples: 181

Max nTPM: 184.4
Min nTPM: 57.4
Std nTPM: 17.9
Median nTPM: 81.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 184.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 151.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 139.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 138.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 134.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 130.6
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 123.8
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 122.6
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 120.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 119.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 116.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 115.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 113.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 111.4
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 110.5
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 108.9
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 107.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 107.0
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 106.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 104.5
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 102.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 102.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 101.2
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 100.1
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 99.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 99.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 99.2
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 96.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 96.2
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 95.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 95.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 95.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 94.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 94.8
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 94.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 94.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 94.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 93.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 93.0
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 92.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 92.4
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 92.4
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 92.0
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 91.9
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 91.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 91.2
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 90.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 90.7
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 90.7
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 90.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 90.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 89.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 89.8
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 88.2
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 88.1
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 88.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 87.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 87.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 87.1
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 87.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 86.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 86.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 86.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 86.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 86.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 86.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 85.3
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 85.2
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 84.8
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 84.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 84.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.4
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 84.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 84.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 84.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 83.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 83.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 83.5
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 83.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 83.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.9
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 82.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 82.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 82.5
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 82.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 82.0
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 82.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 81.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 81.6
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 81.5
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 81.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 81.4
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 81.2
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 81.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 81.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 80.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 80.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 80.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 80.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 80.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 80.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 79.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 79.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 79.5
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 79.2
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 79.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 78.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 78.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.4
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 78.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 78.4
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 78.2
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 78.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 77.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 77.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 77.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 77.4
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 77.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 77.1
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 76.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 76.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 76.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 76.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 76.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 75.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 75.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 75.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 74.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 74.8
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 74.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 74.3
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.9
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 73.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 73.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 73.4
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 73.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 73.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 72.8
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 72.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 72.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 72.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 71.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 71.9
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 71.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 71.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 71.2
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 70.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 70.2
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 69.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 69.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 68.6
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 68.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 68.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 68.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 68.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 67.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 66.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 66.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 65.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 65.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 64.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 64.7
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 64.7
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 63.6
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 62.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 62.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 62.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 61.9
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 61.5
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 61.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.8
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 60.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.4
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 57.4
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

37.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 37.6
FF:10151-102I7 76 years, female 37.6

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.9
Pig sample Sample description nTPM
Amygdala
nTPM: 15.9
Samples: 4

Max nTPM: 19.4
Min nTPM: 14.5
Sample A Female 19.4
Sample B Female 14.6
Sample C Male 14.5
Sample D Male 15.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

35.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 35.9
Samples: 4

Max nTPM: 38.9
Min nTPM: 34.3
Sample A Male 34.3
Sample B Male 35.5
Sample C Female 38.9
Sample D Female 34.8

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

16.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 16.3
81600090 Antisense, RP_080108_02_D06, Mouse strain C57BL/6J (56 days, male) 19.8
68441460 Antisense, RP_041214_02_D05, Mouse strain C57BL/6J (56 days, male) 12.8

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo