MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:17.6 nTPM
HPA Brain:21.7 nTPM
GTEx:17.6 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:37.8 nTPM
Mouse:81.2 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 21.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.3
2411 Female, age 72, unknown 18.7
1827 Male, age 72, unknown 18.6
2019 Male, age 18, unknown 18.1
1870 Female, age 42, unknown 16.7
2219 Male, age 76, both hemispheres 16.4
1833 Male, age 53, unknown 15.7
2666 Male, age 74, left hemisphere 15.7
2586 Male, age 75, left hemisphere 14.6
2828 Female, age 72, unknown 14.5
1830 Male, age 51, unknown 14.2
Dorsal raphe nucleus
nTPM: 18.2
2298 Female, age 72, unknown 21.1
1828 Male, age 53, unknown 19.0
2047 Male, age 72, unknown 18.3
2016 Female, age 72, unknown 17.6
2750 Male, age 76, both hemispheres 15.0
Inferior colliculus
nTPM: 18.0
2097 Female, age 72, unknown 21.8
1890 Male, age 53, unknown 18.1
1848 Female, age 42, unknown 17.3
2849 Male, age 72, unknown 14.8
Median raphe nucleus
nTPM: 17.2
2220 Male, age 76, midline 17.2
Periaquaductal grey, anterior
nTPM: 15.9
1947 Male, age 18, unknown 16.3
1795 Male, age 51, unknown 16.0
2502 Female, age 75, unknown 15.5
Periaquaductal grey, dorsal
nTPM: 16.6
1840 Male, age 53, unknown 18.2
1831 Male, age 72, unknown 17.1
2464 Female, age 72, unknown 16.8
2850 Male, age 76, both hemispheres 14.4
Periaquaductal grey, lateral
nTPM: 15.4
2272 Male, age 74, both hemispheres 16.7
2053 Male, age 18, unknown 15.7
2140 Male, age 76, both hemispheres 14.0
Pretectal area
nTPM: 18.6
1816 Male, age 51, unknown 22.3
2007 Male, age 72, unknown 21.3
1817 Female, age 42, unknown 20.8
1944 Female, age 72, unknown 19.6
1815 Male, age 53, unknown 19.3
2224 Female, age 72, unknown 19.2
2273 Male, age 74, both hemispheres 19.0
2667 Female, age 75, unknown 18.3
2825 Male, age 18, unknown 15.4
2316 Male, age 76, right hemisphere 15.3
2407 Male, age 75, both hemispheres 13.9
Red nucleus
nTPM: 15.0
1821 Female, age 72, unknown 19.8
2725 Female, age 75, unknown 16.2
1904 Male, age 53, unknown 15.6
2785 Male, age 18, unknown 15.3
2503 Female, age 72, unknown 15.1
2588 Male, age 74, left hemisphere 14.8
1954 Female, age 42, unknown 14.7
2584 Male, age 75, left hemisphere 14.5
2227 Male, age 72, unknown 13.7
2769 Male, age 72, unknown 13.6
2823 Male, age 76, right hemisphere 13.6
1865 Male, age 51, unknown 13.5
Substantia nigra
nTPM: 21.7
1916 Female, age 42, unknown 29.3
2241 Male, age 72, unknown 25.6
1851 Male, age 51, unknown 24.9
2409 Female, age 72, unknown 23.2
2699 Male, age 18, unknown 21.3
1941 Male, age 53, unknown 20.2
1889 Female, age 72, unknown 19.8
2665 Male, age 74, both hemispheres 18.6
2590 Female, age 75, unknown 18.1
2583 Male, age 75, right hemisphere 16.0
Superior colliculus
nTPM: 16.1
2668 Female, age 75, unknown 18.2
2587 Male, age 74, left hemisphere 17.9
2087 Female, age 72, unknown 17.8
1796 Male, age 53, unknown 17.3
1839 Male, age 51, unknown 16.6
1895 Male, age 76, right hemisphere 16.3
2261 Male, age 18, unknown 16.3
1913 Female, age 42, unknown 14.5
1995 Male, age 72, unknown 14.1
2664 Male, age 75, both hemispheres 12.3
Ventral tegmental area
nTPM: 19.2
2410 Female, age 72, unknown 25.2
1915 Female, age 42, unknown 23.6
2218 Male, age 76, both hemispheres 19.4
2223 Female, age 72, unknown 16.1
1942 Male, age 51, unknown 16.0
2021 Male, age 53, unknown 14.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 17.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 17.6
Samples: 183

Max nTPM: 36.8
Min nTPM: 5.4
Std nTPM: 5.2
Median nTPM: 16.3
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 36.8
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 35.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 33.7
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 32.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 31.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 31.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 29.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 29.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 29.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 29.1
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 27.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 37.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 33.2
Samples: 4

Max nTPM: 40.9
Min nTPM: 24.5
Sample A Female 40.9
Sample B Female 29.1
Sample C Male 38.1
Sample D Male 24.5
Midbrain
nTPM: 36.3
Samples: 4

Max nTPM: 46.9
Min nTPM: 26.1
Sample A Female 26.1
Sample B Female 29.9
Sample C Male 46.9
Sample D Male 42.4
Periaqueductal gray
nTPM: 30.3
Samples: 3

Max nTPM: 33.7
Min nTPM: 27.6
Sample B Female 29.5
Sample C Male 33.7
Sample D Male 27.6
Superior colliculi
nTPM: 37.8
Samples: 4

Max nTPM: 44.6
Min nTPM: 29.1
Sample A Female 41.6
Sample B Female 29.1
Sample C Male 44.6
Sample D Male 35.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 81.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.3
Samples: 4

Max nTPM: 86.8
Min nTPM: 77.7
Sample A Male 80.8
Sample B Male 79.8
Sample C Female 77.7
Sample D Female 86.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
68797502 Antisense, RP_050126_02_A02, Mouse strain C57BL/6J (56 days, male) 0.7

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