MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:63.4 nTPM
HPA Brain:95.0 nTPM
GTEx:63.4 nTPM
FANTOM5:265.9 Scaled Tags Per Million
Pig:210.0 nTPM
Mouse:124.5 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 74.5
1870 Female, age 42, unknown 106.3
1830 Male, age 51, unknown 92.0
1833 Male, age 53, unknown 89.8
2411 Female, age 72, unknown 86.8
2019 Male, age 18, unknown 82.0
2666 Male, age 74, left hemisphere 65.0
2828 Female, age 72, unknown 63.6
2586 Male, age 75, left hemisphere 61.9
1827 Male, age 72, unknown 54.6
2219 Male, age 76, both hemispheres 43.3
Dorsal raphe nucleus
nTPM: 72.6
2016 Female, age 72, unknown 94.5
2750 Male, age 76, both hemispheres 79.9
1828 Male, age 53, unknown 72.2
2298 Female, age 72, unknown 58.8
2047 Male, age 72, unknown 57.4
Inferior colliculus
nTPM: 71.3
2097 Female, age 72, unknown 79.0
1848 Female, age 42, unknown 73.5
1890 Male, age 53, unknown 68.5
2849 Male, age 72, unknown 64.5
Median raphe nucleus
nTPM: 65.7
2220 Male, age 76, midline 65.7
Periaquaductal grey, anterior
nTPM: 63.0
2502 Female, age 75, unknown 75.2
1947 Male, age 18, unknown 65.3
1795 Male, age 51, unknown 48.6
Periaquaductal grey, dorsal
nTPM: 72.8
2850 Male, age 76, both hemispheres 95.4
2464 Female, age 72, unknown 77.7
1831 Male, age 72, unknown 63.2
1840 Male, age 53, unknown 54.8
Periaquaductal grey, lateral
nTPM: 67.4
2140 Male, age 76, both hemispheres 77.6
2053 Male, age 18, unknown 66.6
2272 Male, age 74, both hemispheres 58.2
Pretectal area
nTPM: 60.3
1815 Male, age 53, unknown 78.4
1817 Female, age 42, unknown 75.2
2316 Male, age 76, right hemisphere 71.0
2224 Female, age 72, unknown 64.0
2667 Female, age 75, unknown 63.4
2273 Male, age 74, both hemispheres 61.3
2825 Male, age 18, unknown 59.6
2007 Male, age 72, unknown 53.7
1944 Female, age 72, unknown 52.3
1816 Male, age 51, unknown 44.1
2407 Male, age 75, both hemispheres 40.9
Red nucleus
nTPM: 95.0
1954 Female, age 42, unknown 127.3
1821 Female, age 72, unknown 125.5
1904 Male, age 53, unknown 115.9
1865 Male, age 51, unknown 112.9
2227 Male, age 72, unknown 98.7
2769 Male, age 72, unknown 97.6
2823 Male, age 76, right hemisphere 97.4
2503 Female, age 72, unknown 93.6
2785 Male, age 18, unknown 90.7
2725 Female, age 75, unknown 81.6
2588 Male, age 74, left hemisphere 52.1
2584 Male, age 75, left hemisphere 47.0
Substantia nigra
nTPM: 65.1
2409 Female, age 72, unknown 94.6
2241 Male, age 72, unknown 77.1
2699 Male, age 18, unknown 76.1
1889 Female, age 72, unknown 72.9
1851 Male, age 51, unknown 67.8
1941 Male, age 53, unknown 57.3
1916 Female, age 42, unknown 53.0
2590 Female, age 75, unknown 51.7
2583 Male, age 75, right hemisphere 51.4
2665 Male, age 74, both hemispheres 48.5
Superior colliculus
nTPM: 71.2
1913 Female, age 42, unknown 112.4
1995 Male, age 72, unknown 109.1
1839 Male, age 51, unknown 74.0
1895 Male, age 76, right hemisphere 72.8
2668 Female, age 75, unknown 72.2
2587 Male, age 74, left hemisphere 67.7
2087 Female, age 72, unknown 56.2
1796 Male, age 53, unknown 55.0
2261 Male, age 18, unknown 47.8
2664 Male, age 75, both hemispheres 44.9
Ventral tegmental area
nTPM: 69.5
2410 Female, age 72, unknown 83.9
2223 Female, age 72, unknown 75.1
1915 Female, age 42, unknown 70.2
1942 Male, age 51, unknown 64.6
2218 Male, age 76, both hemispheres 63.0
2021 Male, age 53, unknown 60.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 63.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.4
Samples: 183

Max nTPM: 240.9
Min nTPM: 13.5
Std nTPM: 29.7
Median nTPM: 55.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 240.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 171.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 151.3
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 136.8
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 121.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 120.8
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 119.6
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 119.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 119.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 117.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 110.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 265.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 265.9
FF:10158-103A5 76 years, female 265.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 210.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 210.0
Samples: 4

Max nTPM: 254.6
Min nTPM: 177.8
Sample A Female 216.5
Sample B Female 191.0
Sample C Male 177.8
Sample D Male 254.6
Midbrain
nTPM: 207.8
Samples: 4

Max nTPM: 353.5
Min nTPM: 132.0
Sample A Female 353.5
Sample B Female 209.7
Sample C Male 135.9
Sample D Male 132.0
Periaqueductal gray
nTPM: 175.6
Samples: 3

Max nTPM: 187.5
Min nTPM: 169.4
Sample B Female 187.5
Sample C Male 169.9
Sample D Male 169.4
Superior colliculi
nTPM: 163.6
Samples: 4

Max nTPM: 190.0
Min nTPM: 136.8
Sample A Female 190.0
Sample B Female 136.8
Sample C Male 158.0
Sample D Male 169.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 126.7
Min nTPM: 121.2
Sample A Male 124.0
Sample B Male 121.2
Sample C Female 126.7
Sample D Female 126.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
73769125 Antisense, RP_051121_04_B01, Mouse strain C57BL/6J (56 days, male) 4.8
69835565 Antisense, RP_050203_01_D03, Mouse strain C57BL/6J (56 days, male) 2.3

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