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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:96.3 nTPM
HPA Brain:465.6 nTPM
GTEx:96.3 nTPM
FANTOM5:239.3 Scaled Tags Per Million
Pig:102.9 nTPM
Mouse:29.7 nTPM
Allen mouse:13.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

465.6
Sample id Sample description nTPM
Amygdala
nTPM: 311.4
2695 Female, age 67, right hemisphere 419.1
2514 Male, age 75, right hemisphere 321.9
2814 Male, age 76, right hemisphere 312.1
2517 Female, age 94, left hemisphere 305.7
1987 Female, age 91, left hemisphere 198.5
Basal amygdala
nTPM: 332.9
2827 Female, age 67, right hemisphere 650.3
2685 Female, age 94, left hemisphere 344.2
2609 Male, age 75, right hemisphere 304.6
2110 Male, age 80, left hemisphere 279.7
1955 Male, age 76, both hemispheres 221.4
2243 Female, age 91, right hemisphere 197.4
Central amygdala
nTPM: 394.7
2826 Female, age 94, left hemisphere 814.9
2239 Male, age 80, left hemisphere 326.6
2515 Male, age 75, right hemisphere 306.8
1905 Male, age 76, both hemispheres 265.6
2701 Female, age 91, right hemisphere 259.3
Corticomedial amygdala
nTPM: 255.2
2535 Female, age 67, right hemisphere 385.4
2428 Male, age 75, right hemisphere 287.4
2429 Female, age 94, left hemisphere 258.4
2240 Male, age 76, both hemispheres 231.0
2829 Male, age 80, left hemisphere 199.5
2242 Female, age 91, right hemisphere 169.6
Lateral amygdala
nTPM: 465.6
2830 Female, age 67, right hemisphere 870.3
2534 Female, age 94, left hemisphere 477.1
2516 Male, age 75, right hemisphere 455.7
2256 Male, age 80, left hemisphere 412.8
2255 Female, age 91, right hemisphere 293.6
1883 Male, age 76, both hemispheres 283.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

96.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 96.3
Samples: 181

Max nTPM: 371.1
Min nTPM: 19.0
Std nTPM: 57.3
Median nTPM: 79.0
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 371.1
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 272.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 237.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 235.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 234.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 224.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 223.7
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 222.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 218.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 218.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 213.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 211.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 206.7
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 205.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 201.5
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 195.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 186.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 185.9
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 185.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 185.0
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 178.2
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 172.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 172.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 172.5
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 170.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 164.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 161.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 159.8
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 155.5
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 145.4
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 144.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 144.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 141.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 140.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 140.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 137.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 136.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 136.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 135.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 133.7
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 126.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 123.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 118.1
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 117.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 116.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 115.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 115.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 114.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 113.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 111.7
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 109.9
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 108.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 108.2
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 106.9
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 106.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 106.2
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 105.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 105.0
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 104.9
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 104.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 103.6
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 103.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 102.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 100.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 100.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 100.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 98.5
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 97.9
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 97.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 97.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 96.9
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 96.4
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 96.4
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 91.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 87.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 86.7
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 85.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 85.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 84.7
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 84.3
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 83.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 81.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 81.3
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 81.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 80.6
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 80.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 80.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 79.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 79.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 77.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 76.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 76.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 76.0
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 75.9
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 75.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 74.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 74.4
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 74.0
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 73.7
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 73.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 73.2
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 72.2
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.3
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 69.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 69.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 68.3
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 67.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 67.0
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 66.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 66.1
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 65.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 62.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 61.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 61.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 60.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 59.9
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 59.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 59.3
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 59.1
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 59.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 58.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 58.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 58.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 57.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 57.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 56.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 56.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 56.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 56.2
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 55.0
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 54.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 54.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 54.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 53.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 53.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 52.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 52.7
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 52.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 52.2
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 51.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 51.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 50.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 49.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 49.7
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 48.9
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 48.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 47.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 47.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 47.8
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 47.4
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 46.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 46.8
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 46.6
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 46.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 45.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 43.8
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 43.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 43.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 41.3
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 40.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 37.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 36.9
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 36.8
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 36.3
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 36.1
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 35.7
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 35.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 35.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 34.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 33.4
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 32.5
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 27.1
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 19.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

239.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 239.3
FF:10151-102I7 76 years, female 239.3

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

102.9
Pig sample Sample description nTPM
Amygdala
nTPM: 102.9
Samples: 4

Max nTPM: 120.5
Min nTPM: 82.3
Sample A Female 109.3
Sample B Female 120.5
Sample C Male 99.3
Sample D Male 82.3

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

29.7
Mouse sample Sample description nTPM
Amygdala
nTPM: 29.7
Samples: 4

Max nTPM: 31.3
Min nTPM: 28.6
Sample A Male 31.3
Sample B Male 28.6
Sample C Female 30.2
Sample D Female 28.6

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

13.1
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 13.1
68844468 Antisense, RP_050222_01_F10, Mouse strain C57BL/6J (56 days, male) 14.6
71924066 Antisense, RP_051017_02_H07, Mouse strain C57BL/6J (56 days, male) 11.6

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