HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:78.4 nTPM
HPA Brain:77.0 nTPM
GTEx:78.4 nTPM
FANTOM5:42.6 Scaled Tags Per Million
Pig:67.1 nTPM
Mouse:149.7 nTPM
Allen mouse:9.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 77.0
Sample id Sample description nTPM
Hippocampus
nTPM: 73.5
1898 Male, age 80, left hemisphere 86.9
1855 Male, age 76, left hemisphere 77.0
2529 Female, age 94, left hemisphere 74.6
2621 Female, age 67, right hemisphere 72.9
2148 Female, age 91, left hemisphere 65.1
1911 Female, age 85, right hemisphere 64.6
Dentate gyrus
nTPM: 71.9
2530 Female, age 94, left hemisphere 80.4
2010 Male, age 76, both hemispheres 78.4
1927 Female, age 91, both hemispheres 73.9
2528 Male, age 74, both hemispheres 72.0
2246 Female, age 85, both hemispheres 66.6
2531 Female, age 67, both hemispheres 60.1
Entorhinal gyrus
nTPM: 72.5
2764 Male, age 80, right hemisphere 82.6
2613 Female, age 94, left hemisphere 79.3
2117 Female, age 91, right hemisphere 73.6
1787 Male, age 76, left hemisphere 71.3
1938 Female, age 85, left hemisphere 71.0
2686 Male, age 75, right hemisphere 57.0
Hippocampus, CA1
nTPM: 77.0
2749 Male, age 80, left hemisphere 101.6
1873 Female, age 85, both hemispheres 74.0
2527 Male, age 74, both hemispheres 73.8
2082 Female, age 91, right hemisphere 69.9
2045 Male, age 76, both hemispheres 65.5
Hippocampus, CA2
nTPM: 75.3
1963 Male, age 80, left hemisphere 84.3
1892 Male, age 76, both hemispheres 83.2
2437 Female, age 94, left hemisphere 83.1
2249 Male, age 74, both hemispheres 74.2
2113 Female, age 91, right hemisphere 64.3
1940 Female, age 85, left hemisphere 62.5
Hippocampus, CA3
nTPM: 70.5
2436 Male, age 74, both hemispheres 76.7
2620 Female, age 94, left hemisphere 75.2
2137 Male, age 80, left hemisphere 75.0
1867 Male, age 76, both hemispheres 72.2
1891 Female, age 85, both hemispheres 64.6
2861 Female, age 67, both hemispheres 59.5
Parahippocampal cortex
nTPM: 65.0
1850 Male, age 80, both hemispheres 72.1
2692 Male, age 74, both hemispheres 69.0
2245 Female, age 91, both hemispheres 68.7
1990 Female, age 91, right hemisphere 66.8
2018 Male, age 76, both hemispheres 66.7
2250 Female, age 67, right hemisphere 66.7
1933 Female, age 85, both hemispheres 64.2
2622 Female, age 67, right hemisphere 61.8
2532 Female, age 72, left hemisphere 60.3
2693 Female, age 94, both hemispheres 53.5
Perirhinal gyrus
nTPM: 70.5
1847 Female, age 91, left hemisphere 76.3
1794 Male, age 80, right hemisphere 75.6
1841 Female, age 85, right hemisphere 71.1
2521 Female, age 94, right hemisphere 68.5
2848 Male, age 76, right hemisphere 61.0
Subiculum
nTPM: 71.3
2438 Female, age 94, left hemisphere 79.4
2619 Male, age 74, both hemispheres 75.5
1977 Female, age 85, both hemispheres 72.5
1901 Male, age 80, both hemispheres 68.6
2042 Male, age 76, both hemispheres 66.8
2729 Female, age 91, right hemisphere 64.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 78.4
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 78.4
Samples: 255

Max nTPM: 181.9
Min nTPM: 28.3
Std nTPM: 20.5
Median nTPM: 74.2
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 181.9
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 177.3
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 141.8
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 140.8
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 129.4
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 127.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 126.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 122.9
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 121.1
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 120.8
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 120.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 42.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 42.6
FF:10153-102I9 76 years, female 45.8
FF:10169-103B7 60 years, female 39.4

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 67.1
Pig sample Sample description nTPM
Subiculum
nTPM: 57.8
Samples: 4

Max nTPM: 74.8
Min nTPM: 49.3
Sample A Female 74.8
Sample B Female 50.5
Sample C Male 56.7
Sample D Male 49.3
Dorsal hippocampus
nTPM: 66.2
Samples: 4

Max nTPM: 88.0
Min nTPM: 49.7
Sample A Female 88.0
Sample B Female 64.3
Sample C Male 62.9
Sample D Male 49.7
Entorhinal cortex
nTPM: 56.8
Samples: 4

Max nTPM: 60.5
Min nTPM: 49.0
Sample A Female 60.5
Sample B Female 57.6
Sample C Male 60.0
Sample D Male 49.0
Ventral hippocampus
nTPM: 67.1
Samples: 4

Max nTPM: 81.8
Min nTPM: 45.9
Sample A Female 71.3
Sample B Female 45.9
Sample C Male 81.8
Sample D Male 69.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 149.7
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 134.5
Samples: 4

Max nTPM: 143.5
Min nTPM: 130.0
Sample A Male 130.7
Sample B Male 130.0
Sample C Female 143.5
Sample D Female 133.8
Hippocampal formation
nTPM: 149.7
Samples: 4

Max nTPM: 156.3
Min nTPM: 143.1
Sample A Male 156.3
Sample B Male 143.1
Sample C Female 151.5
Sample D Female 148.0

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 9.2
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 9.2
67978711 Antisense, RP_040923_01_F07, Mouse strain C57BL/6J (56 days, male) 9.2

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