MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:68.7 nTPM
HPA Brain:80.7 nTPM
GTEx:68.7 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:66.9 nTPM
Mouse:100.3 nTPM
Allen mouse:17.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 80.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 59.4
2019 Male, age 18, unknown 90.0
2666 Male, age 74, left hemisphere 65.2
1827 Male, age 72, unknown 61.7
2411 Female, age 72, unknown 60.0
1833 Male, age 53, unknown 57.3
2219 Male, age 76, both hemispheres 56.5
2586 Male, age 75, left hemisphere 56.5
1870 Female, age 42, unknown 53.2
1830 Male, age 51, unknown 48.7
2828 Female, age 72, unknown 44.8
Dorsal raphe nucleus
nTPM: 55.2
1828 Male, age 53, unknown 66.7
2298 Female, age 72, unknown 66.3
2016 Female, age 72, unknown 52.8
2750 Male, age 76, both hemispheres 46.1
2047 Male, age 72, unknown 44.3
Inferior colliculus
nTPM: 74.7
2097 Female, age 72, unknown 86.8
1890 Male, age 53, unknown 76.8
1848 Female, age 42, unknown 71.8
2849 Male, age 72, unknown 63.4
Median raphe nucleus
nTPM: 49.7
2220 Male, age 76, midline 49.7
Periaquaductal grey, anterior
nTPM: 63.5
1947 Male, age 18, unknown 67.6
2502 Female, age 75, unknown 66.8
1795 Male, age 51, unknown 56.2
Periaquaductal grey, dorsal
nTPM: 53.1
1840 Male, age 53, unknown 63.3
1831 Male, age 72, unknown 51.7
2464 Female, age 72, unknown 49.5
2850 Male, age 76, both hemispheres 48.0
Periaquaductal grey, lateral
nTPM: 48.8
2053 Male, age 18, unknown 50.1
2272 Male, age 74, both hemispheres 49.6
2140 Male, age 76, both hemispheres 46.7
Pretectal area
nTPM: 80.7
1817 Female, age 42, unknown 119.4
1944 Female, age 72, unknown 118.6
2007 Male, age 72, unknown 112.7
1816 Male, age 51, unknown 112.5
1815 Male, age 53, unknown 90.4
2667 Female, age 75, unknown 70.4
2224 Female, age 72, unknown 60.2
2316 Male, age 76, right hemisphere 56.3
2407 Male, age 75, both hemispheres 55.8
2273 Male, age 74, both hemispheres 46.9
2825 Male, age 18, unknown 44.6
Red nucleus
nTPM: 61.2
1821 Female, age 72, unknown 87.5
2785 Male, age 18, unknown 80.1
2725 Female, age 75, unknown 65.8
2588 Male, age 74, left hemisphere 59.5
2503 Female, age 72, unknown 58.9
1865 Male, age 51, unknown 57.8
2584 Male, age 75, left hemisphere 57.6
2227 Male, age 72, unknown 56.7
2823 Male, age 76, right hemisphere 55.5
2769 Male, age 72, unknown 54.6
1954 Female, age 42, unknown 53.2
1904 Male, age 53, unknown 46.7
Substantia nigra
nTPM: 79.1
2241 Male, age 72, unknown 105.0
1889 Female, age 72, unknown 99.1
1916 Female, age 42, unknown 94.4
1941 Male, age 53, unknown 84.6
1851 Male, age 51, unknown 82.5
2665 Male, age 74, both hemispheres 75.4
2409 Female, age 72, unknown 73.5
2590 Female, age 75, unknown 63.3
2583 Male, age 75, right hemisphere 59.2
2699 Male, age 18, unknown 53.8
Superior colliculus
nTPM: 66.3
2087 Female, age 72, unknown 93.8
1895 Male, age 76, right hemisphere 75.8
2668 Female, age 75, unknown 74.5
2261 Male, age 18, unknown 70.7
1913 Female, age 42, unknown 61.3
1839 Male, age 51, unknown 60.9
1796 Male, age 53, unknown 59.4
2664 Male, age 75, both hemispheres 59.1
2587 Male, age 74, left hemisphere 54.7
1995 Male, age 72, unknown 52.4
Ventral tegmental area
nTPM: 60.6
2410 Female, age 72, unknown 73.4
2218 Male, age 76, both hemispheres 73.0
1915 Female, age 42, unknown 68.4
1942 Male, age 51, unknown 56.3
2223 Female, age 72, unknown 49.2
2021 Male, age 53, unknown 43.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 68.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 68.7
Samples: 183

Max nTPM: 173.6
Min nTPM: 27.6
Std nTPM: 27.9
Median nTPM: 62.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 173.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 161.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 158.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 153.5
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 149.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 143.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 139.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 135.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 135.1
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 133.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 133.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.7
Samples: 4

Max nTPM: 64.5
Min nTPM: 46.3
Sample A Female 64.5
Sample B Female 46.3
Sample C Male 52.9
Sample D Male 50.9
Midbrain
nTPM: 63.9
Samples: 4

Max nTPM: 71.8
Min nTPM: 54.0
Sample A Female 54.0
Sample B Female 62.4
Sample C Male 67.5
Sample D Male 71.8
Periaqueductal gray
nTPM: 53.4
Samples: 3

Max nTPM: 55.8
Min nTPM: 51.3
Sample B Female 55.8
Sample C Male 53.1
Sample D Male 51.3
Superior colliculi
nTPM: 66.9
Samples: 4

Max nTPM: 80.4
Min nTPM: 46.2
Sample A Female 80.4
Sample B Female 46.2
Sample C Male 72.2
Sample D Male 68.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 100.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 100.3
Samples: 4

Max nTPM: 104.1
Min nTPM: 94.6
Sample A Male 104.1
Sample B Male 101.3
Sample C Female 94.6
Sample D Female 101.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 17.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.7
2705 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 17.7
2706 Antisense, RP_040604_02_A10, Mouse strain C57BL/6J (56 days, male) 9.2

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