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  • SUMMARY

  • TISSUE

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  • SF3B5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:91.9 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:388.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA054408
Glial cells Low
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

91.9
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 91.9
Samples: 300

Max nTPM: 186.4
Min nTPM: 49.0
Std nTPM: 21.2
Median nTPM: 87.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 186.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 185.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 161.4
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 159.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 159.1
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 158.6
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 157.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 154.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 138.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 137.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 133.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 132.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 131.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 130.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 130.1
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 129.5
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 126.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 125.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 123.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 122.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 122.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 122.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 122.6
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 122.0
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 122.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 121.8
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 121.5
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 120.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 119.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 119.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 119.7
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 119.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 118.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 117.3
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 117.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 117.1
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 117.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 116.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 115.8
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 115.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 114.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 112.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 112.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 111.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 111.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 111.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 111.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 111.0
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 110.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 110.6
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 110.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 110.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 110.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 110.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 109.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 109.7
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 109.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 108.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 108.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 108.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 108.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 108.0
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 107.9
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 107.8
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 107.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 107.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 107.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 106.3
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 105.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 105.5
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 105.3
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 104.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 104.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 104.4
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 103.2
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 102.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 102.8
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 102.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 102.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 102.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 102.0
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 101.7
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 101.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 100.7
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 100.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 100.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 99.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 99.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 98.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 98.8
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 98.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 98.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 97.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 97.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 97.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 97.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 96.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 96.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 96.2
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 96.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 96.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 95.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 95.3
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 95.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 95.1
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 94.8
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 94.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 94.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 93.9
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 93.8
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 93.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 93.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 93.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 92.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 92.7
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 92.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 92.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 92.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 92.3
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 91.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 91.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 91.8
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 91.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 91.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 91.7
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 91.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 91.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 91.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 90.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 90.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 90.2
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 90.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 90.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 90.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 89.8
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 89.7
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 89.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 89.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 89.5
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 89.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 89.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 89.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 88.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 88.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 88.6
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 88.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 88.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 88.1
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 88.0
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 87.8
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 87.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 87.5
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 87.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 87.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 86.8
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 86.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 86.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 86.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 86.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 86.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 86.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 86.1
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 86.0
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 85.9
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 85.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 85.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 85.1
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 84.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 84.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 84.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 84.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 84.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 84.4
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 84.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 84.0
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 84.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 83.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 83.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 83.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 83.2
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 83.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 83.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 82.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 82.8
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 82.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 82.6
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 82.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 82.1
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 81.8
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 81.7
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 81.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 81.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 81.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 81.0
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 80.9
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 80.8
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 80.8
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 80.6
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 80.4
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 80.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 80.2
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 80.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 80.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 79.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 79.8
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 79.8
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 79.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 79.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 79.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 79.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 79.3
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 79.2
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 79.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 79.1
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 79.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 79.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 78.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 78.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 78.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 78.3
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 78.2
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 78.1
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 78.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 77.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 77.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 77.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 77.1
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 77.1
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 76.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 76.6
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 76.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 76.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 76.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 75.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 75.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 75.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 75.5
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 74.8
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 74.6
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 74.6
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 74.2
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 74.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 73.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 73.7
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 73.6
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 73.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 73.5
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 73.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 73.0
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 73.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 72.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 72.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 72.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 72.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 72.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 72.3
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 72.3
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 72.1
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 72.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 71.9
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 71.6
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 71.6
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 71.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 71.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 70.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 70.0
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 69.9
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 69.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 69.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 69.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 69.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 69.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 68.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 68.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 68.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 68.4
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 68.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 68.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 67.8
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 67.6
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 67.5
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 67.2
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 67.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 66.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 66.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 65.9
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 65.6
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 65.2
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 64.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 64.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 64.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 63.5
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 63.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 63.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 61.2
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 60.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 60.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 59.7
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 53.7
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 49.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 91.3
FF:10164-103B2 76 years, female 91.3

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

388.4
Pig sample Sample description nTPM
Caudate
nTPM: 388.4
Samples: 4

Max nTPM: 442.5
Min nTPM: 329.6
Sample A Female 363.2
Sample B Female 418.1
Sample C Male 442.5
Sample D Male 329.6

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