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  • TISSUE

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  • TRAPPC1
TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:128.0 nTPM
HPA Brain:80.4 nTPM
GTEx:128.0 nTPM
FANTOM5:50.4 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 73.9
2565 Male, age 75, midline 85.9
1981 Female, age 72, midline 79.0
2816 Male, age 47, midline 75.8
2194 Female, age 79, both hemispheres 73.0
2048 Male, age 55, midline 55.9
Cervical spinal cord, dorsal horn
nTPM: 80.4
2173 Female, age 72, unknown 91.6
2296 Male, age 66, both hemispheres 87.2
2721 Male, age 90, both hemispheres 78.7
2297 Male, age 75, both hemispheres 77.9
2069 Male, age 47, both hemispheres 77.8
1877 Male, age 55, unknown 69.3
Cervical spinal cord, ventral horn
nTPM: 75.9
2098 Female, age 72, unknown 87.0
2480 Male, age 75, both hemispheres 82.0
2809 Male, age 90, both hemispheres 75.8
2820 Female, age 79, both hemispheres 74.0
2068 Male, age 55, unknown 70.2
2295 Male, age 66, both hemispheres 66.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.0
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 128.0
Samples: 204

Max nTPM: 210.8
Min nTPM: 67.0
Std nTPM: 27.6
Median nTPM: 125.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 210.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 210.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 206.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 200.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 193.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 192.9
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 185.2
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 184.9
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 184.3
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 182.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 181.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 181.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 179.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 178.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 177.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 177.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 173.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 171.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 171.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 170.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 169.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 169.0
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 167.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 167.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 165.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 165.5
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 161.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 160.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 159.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 157.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 156.7
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 156.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 151.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 149.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 149.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 148.4
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 147.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 147.1
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 147.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 146.9
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 146.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 146.0
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 145.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 145.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 144.8
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 143.5
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 143.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 143.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 143.1
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 143.0
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 142.1
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 141.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 140.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 140.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 140.4
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 140.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 139.4
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 139.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 139.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 138.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 138.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 138.2
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 138.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 137.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 137.9
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 136.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 136.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 136.3
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 136.0
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 135.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 135.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 135.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 135.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 134.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 134.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 133.8
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 133.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 133.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 132.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 132.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 131.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 131.4
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 131.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 131.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 130.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 130.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 129.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 129.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 129.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 128.8
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 128.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 128.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 128.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 127.6
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 127.6
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 127.5
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 126.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 126.4
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 125.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 125.7
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 125.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 125.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 125.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 124.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 124.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 123.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 123.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 123.2
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 123.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 123.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 122.8
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 122.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 121.2
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 120.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 120.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 120.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 120.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 119.9
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 119.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 118.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 118.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 118.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 118.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 117.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 117.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 117.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 117.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 117.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.9
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 115.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 115.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 115.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 114.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 114.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 114.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 113.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 113.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 113.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 113.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 112.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 112.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 112.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 112.0
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 111.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 111.5
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 110.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 110.0
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 109.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 109.0
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 108.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 108.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 108.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 108.6
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 108.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 108.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 108.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 108.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 108.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 107.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 107.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 107.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 105.7
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 105.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 104.0
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 103.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 103.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 102.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 102.5
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 102.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 101.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 100.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 100.6
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 100.1
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 99.5
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 99.3
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 99.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 98.8
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 98.8
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 97.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 97.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 97.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 96.6
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 96.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 96.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 94.6
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 94.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 93.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 93.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 91.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 91.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 91.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 90.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 89.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 88.9
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 86.5
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 85.7
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 84.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 83.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 83.8
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 83.1
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 78.0
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 73.0
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 67.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

50.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 50.4
FF:10181-103D1 60 years, female 55.4
FF:10159-103A6 76 years, female 45.3

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