MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:111.4 nTPM
HPA Brain:197.3 nTPM
GTEx:111.4 nTPM
FANTOM5:24.1 Scaled Tags Per Million
Pig:258.9 nTPM
Mouse:390.3 nTPM
Allen mouse:29.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 197.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 107.4
2219 Male, age 76, both hemispheres 143.0
1827 Male, age 72, unknown 137.0
2411 Female, age 72, unknown 123.3
1870 Female, age 42, unknown 120.5
1833 Male, age 53, unknown 119.4
2666 Male, age 74, left hemisphere 108.7
1830 Male, age 51, unknown 92.8
2828 Female, age 72, unknown 86.4
2586 Male, age 75, left hemisphere 80.0
2019 Male, age 18, unknown 63.1
Dorsal raphe nucleus
nTPM: 131.5
2298 Female, age 72, unknown 197.7
2750 Male, age 76, both hemispheres 145.5
2047 Male, age 72, unknown 138.7
2016 Female, age 72, unknown 90.0
1828 Male, age 53, unknown 85.4
Inferior colliculus
nTPM: 141.0
2097 Female, age 72, unknown 172.9
2849 Male, age 72, unknown 139.7
1848 Female, age 42, unknown 129.4
1890 Male, age 53, unknown 122.0
Median raphe nucleus
nTPM: 197.3
2220 Male, age 76, midline 197.3
Periaquaductal grey, anterior
nTPM: 191.2
2502 Female, age 75, unknown 265.9
1795 Male, age 51, unknown 158.6
1947 Male, age 18, unknown 149.0
Periaquaductal grey, dorsal
nTPM: 156.3
1840 Male, age 53, unknown 201.7
1831 Male, age 72, unknown 167.1
2850 Male, age 76, both hemispheres 139.3
2464 Female, age 72, unknown 117.2
Periaquaductal grey, lateral
nTPM: 127.3
2053 Male, age 18, unknown 167.3
2140 Male, age 76, both hemispheres 134.6
2272 Male, age 74, both hemispheres 80.0
Pretectal area
nTPM: 162.0
2667 Female, age 75, unknown 309.4
1944 Female, age 72, unknown 234.4
1816 Male, age 51, unknown 223.5
2224 Female, age 72, unknown 198.9
2825 Male, age 18, unknown 173.1
1817 Female, age 42, unknown 134.6
1815 Male, age 53, unknown 132.4
2316 Male, age 76, right hemisphere 120.8
2407 Male, age 75, both hemispheres 103.3
2007 Male, age 72, unknown 89.4
2273 Male, age 74, both hemispheres 62.1
Red nucleus
nTPM: 74.9
2584 Male, age 75, left hemisphere 99.5
1821 Female, age 72, unknown 90.2
1954 Female, age 42, unknown 86.8
2503 Female, age 72, unknown 80.7
2769 Male, age 72, unknown 79.8
2227 Male, age 72, unknown 76.0
1904 Male, age 53, unknown 75.1
2588 Male, age 74, left hemisphere 74.1
2823 Male, age 76, right hemisphere 65.8
1865 Male, age 51, unknown 58.1
2785 Male, age 18, unknown 56.9
2725 Female, age 75, unknown 56.2
Substantia nigra
nTPM: 135.7
1916 Female, age 42, unknown 202.8
2665 Male, age 74, both hemispheres 175.4
2241 Male, age 72, unknown 158.0
1851 Male, age 51, unknown 150.1
1889 Female, age 72, unknown 140.7
2699 Male, age 18, unknown 134.2
1941 Male, age 53, unknown 132.1
2409 Female, age 72, unknown 129.9
2583 Male, age 75, right hemisphere 71.7
2590 Female, age 75, unknown 61.8
Superior colliculus
nTPM: 130.0
2087 Female, age 72, unknown 196.4
2261 Male, age 18, unknown 195.4
1796 Male, age 53, unknown 144.3
1895 Male, age 76, right hemisphere 140.6
1839 Male, age 51, unknown 127.2
2668 Female, age 75, unknown 111.6
1913 Female, age 42, unknown 100.2
2664 Male, age 75, both hemispheres 98.1
1995 Male, age 72, unknown 94.6
2587 Male, age 74, left hemisphere 91.2
Ventral tegmental area
nTPM: 149.2
2218 Male, age 76, both hemispheres 188.5
2410 Female, age 72, unknown 167.0
1915 Female, age 42, unknown 159.2
2021 Male, age 53, unknown 149.6
1942 Male, age 51, unknown 134.2
2223 Female, age 72, unknown 96.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 111.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 111.4
Samples: 183

Max nTPM: 512.2
Min nTPM: 3.6
Std nTPM: 83.9
Median nTPM: 92.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 512.2
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 506.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 352.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 334.6
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 311.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 298.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 293.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 285.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 257.8
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 250.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 240.3
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.1
FF:10158-103A5 76 years, female 24.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 258.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 196.7
Samples: 4

Max nTPM: 299.3
Min nTPM: 67.3
Sample A Female 280.3
Sample B Female 139.9
Sample C Male 299.3
Sample D Male 67.3
Midbrain
nTPM: 258.9
Samples: 4

Max nTPM: 459.0
Min nTPM: 64.6
Sample A Female 64.6
Sample B Female 181.3
Sample C Male 330.8
Sample D Male 459.0
Periaqueductal gray
nTPM: 195.4
Samples: 3

Max nTPM: 267.6
Min nTPM: 152.9
Sample B Female 165.7
Sample C Male 267.6
Sample D Male 152.9
Superior colliculi
nTPM: 199.6
Samples: 4

Max nTPM: 377.5
Min nTPM: 52.1
Sample A Female 377.5
Sample B Female 52.1
Sample C Male 122.0
Sample D Male 246.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 390.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 390.3
Samples: 4

Max nTPM: 398.8
Min nTPM: 383.3
Sample A Male 398.8
Sample B Male 391.7
Sample C Female 383.3
Sample D Female 387.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 29.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 29.9
67767440 Antisense, RP_040916_01_G10, Mouse strain C57BL/6J (56 days, male) 29.9

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo