BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni
Consensus:24.6 nTPM
HPA Brain:27.0 nTPM
GTEx:24.6 nTPM
FANTOM5:64.7 Scaled Tags Per Million
Pig:18.8 nTPM
Mouse:8.6 nTPM
Allen mouse:0.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

CAUDATE - Antibody stainingi
Antibody HPA065294
Glial cells Low
Neuronal cells Low



BASAL GANGLIA - HPA Brain RNA-seq
Max subtype nTPMi 27.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 27.0
2481 Female, age 94, left hemisphere 41.2
2288 Male, age 75, left hemisphere 33.0
2289 Male, age 61, right hemisphere 32.8
2290 Female, age 72, unknown 29.9
1857 Female, age 85, left hemisphere 23.8
1781 Male, age 74, unknown 19.9
2846 Female, age 79, unknown 18.5
1854 Male, age 80, left hemisphere 16.9
Globus pallidus, externus
nTPM: 8.8
2646 Male, age 61, right hemisphere 12.5
1996 Male, age 80, right hemisphere 8.8
2567 Female, age 72, unknown 8.0
2395 Male, age 75, both hemispheres 7.7
2772 Female, age 79, unknown 6.8
Globus pallidus, internus
nTPM: 8.2
2483 Female, age 94, right hemisphere 18.0
2111 Female, age 85, right hemisphere 7.3
2037 Male, age 80, right hemisphere 7.2
1818 Male, age 74, unknown 6.6
2287 Male, age 75, right hemisphere 6.5
2778 Female, age 91, both hemispheres 6.1
2566 Female, age 72, unknown 5.6
Nucleus accumbens
nTPM: 21.9
2286 Male, age 75, left hemisphere 31.8
2391 Female, age 94, left hemisphere 25.9
2824 Male, age 61, right hemisphere 25.1
1806 Female, age 85, left hemisphere 22.6
1783 Male, age 74, unknown 20.3
1856 Female, age 91, right hemisphere 18.0
2698 Female, age 72, unknown 17.9
2732 Male, age 80, right hemisphere 13.4
Nucleus basalis of Meynert
nTPM: 13.5
2569 Male, age 61, both hemispheres 15.7
2484 Female, age 94, left hemisphere 15.1
2393 Male, age 80, right hemisphere 12.5
2821 Male, age 75, both hemispheres 10.9
Nucleus of the diagonal band
nTPM: 19.1
1979 Male, age 74, unknown 22.5
2195 Female, age 85, both hemispheres 21.8
1812 Female, age 91, both hemispheres 19.8
2775 Male, age 80, right hemisphere 16.0
2029 Male, age 61, right hemisphere 15.4
Putamen
nTPM: 19.6
2482 Female, age 94, left hemisphere 28.3
2647 Male, age 75, left hemisphere 21.7
1937 Female, age 91, right hemisphere 19.7
2489 Female, age 72, unknown 19.0
1829 Male, age 74, unknown 18.0
1838 Male, age 80, right hemisphere 16.4
2466 Female, age 79, unknown 14.2
Septal nuclei
nTPM: 19.6
2059 Female, age 85, both hemispheres 27.3
1960 Male, age 74, unknown 23.0
2629 Female, age 94, right hemisphere 21.1
2009 Female, age 91, both hemispheres 20.0
2199 Male, age 80, right hemisphere 19.3
2031 Female, age 72, unknown 16.8
2394 Male, age 61, left hemisphere 9.4
Stria terminalis, bed nucleus
nTPM: 13.8
2486 Female, age 94, both hemispheres 17.3
1974 Female, age 91, both hemispheres 16.8
2201 Male, age 74, unknown 7.2

BASAL GANGLIA - GTEx RNA-seqi
Max subtype nTPMi 24.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 24.6
Samples: 300

Max nTPM: 73.5
Min nTPM: 2.7
Std nTPM: 11.1
Median nTPM: 22.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 73.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 57.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 57.6
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 51.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 51.1
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 50.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 49.6
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 49.5
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 49.4
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 48.5
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 47.7
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 18.8
Samples: 285

Max nTPM: 61.6
Min nTPM: 2.1
Std nTPM: 9.5
Median nTPM: 16.4
GTEX-147F4-0011-R6b-SM-5S2UP 50-59 years, male 61.6
GTEX-14753-0011-R6b-SM-5S2UD 60-69 years, male 59.2
GTEX-131XW-0011-R6b-SM-5K7XY 50-59 years, female 51.6
GTEX-1JN1M-0011-R6b-SM-G9EQ7 60-69 years, female 51.5
GTEX-139TS-0011-R6a-SM-5J2OB 60-69 years, male 48.7
GTEX-1CB4H-0011-R6b-SM-CKZNK 60-69 years, female 45.5
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 45.0
GTEX-1IKOH-0011-R6b-SM-A9G1W 60-69 years, female 43.9
GTEX-1EH9U-0011-R6a-SM-CJI2C 60-69 years, male 42.0
GTEX-S7PM-0011-R6A-SM-3NM8F 60-69 years, male 41.9
GTEX-13QJC-0011-R6a-SM-5S2VI 60-69 years, female 39.4
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Brain - Putamen (basal ganglia)
Average nTPM: 20.3
Samples: 254

Max nTPM: 51.6
Min nTPM: 2.1
Std nTPM: 9.8
Median nTPM: 18.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 51.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 50.7
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 47.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 45.6
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 44.3
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 43.1
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 42.5
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 42.5
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 42.1
GTEX-ZZPT-0011-R7a-SM-H7OH8 50-59 years, male 42.1
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 41.9
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BASAL GANGLIA - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 64.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 45.1
FF:10164-103B2 76 years, female 45.1
Nucleus accumbens
Scaled Tags Per Million: 39.4
FF:10037-101F1 23-56 years, mixed 39.4
Putamen
Scaled Tags Per Million: 64.7
FF:10176-103C5 60 years, female 64.7
Globus pallidus
Scaled Tags Per Million: 21.8
FF:10175-103C4 60 years, female 26.6
FF:10161-103A8 76 years, female 17.0

BASAL GANGLIA - Pig RNA-seqi
Max subtype nTPMi 18.8
Pig sample Sample description nTPM
Caudate
nTPM: 18.8
Samples: 4

Max nTPM: 23.1
Min nTPM: 14.5
Sample A Female 14.5
Sample B Female 23.1
Sample C Male 21.4
Sample D Male 16.2
Putamen
nTPM: 13.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 4.4
Sample A Female 4.4
Sample B Female 16.6
Sample C Male 17.1
Sample D Male 15.1
Septum
nTPM: 14.3
Samples: 4

Max nTPM: 24.2
Min nTPM: 1.8
Sample A Female 13.6
Sample B Female 17.4
Sample C Male 1.8
Sample D Male 24.2
Ventral pallidum
nTPM: 11.9
Samples: 4

Max nTPM: 15.5
Min nTPM: 3.7
Sample A Female 15.5
Sample B Female 14.6
Sample C Male 3.7
Sample D Male 13.7

BASAL GANGLIA - Mouse RNA-seqi
Max subtype nTPMi 8.6
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 6.4
Samples: 4

Max nTPM: 7.3
Min nTPM: 5.7
Sample A Male 5.8
Sample B Male 5.7
Sample C Female 7.3
Sample D Female 6.7
Septum
nTPM: 8.6
Samples: 4

Max nTPM: 11.7
Min nTPM: 5.4
Sample A Male 5.4
Sample B Male 11.7
Sample C Female 8.4
Sample D Female 9.0
Ventral forebrain
nTPM: 6.8
Samples: 4

Max nTPM: 7.5
Min nTPM: 6.2
Sample A Male 7.5
Sample B Male 6.2
Sample C Female 6.7
Sample D Female 6.6

BASAL GANGLIA - Allen Mouse ISHi
Max subtype Expression energyi 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.1
100142559 Antisense, RP_110519_02_G10, Mouse strain C57BL/6J (56 days, male) 0.1
Pallidum
Expression energy: 0.0
100142559 Antisense, RP_110519_02_G10, Mouse strain C57BL/6J (56 days, male) 0.0

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