MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:6.0 nTPM
HPA Brain:84.4 nTPM
GTEx:6.0 nTPM
FANTOM5:43.7 Scaled Tags Per Million
Pig:27.5 nTPM
Mouse:4.7 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
2828 Female, age 72, unknown 73.4
2666 Male, age 74, left hemisphere 62.8
1827 Male, age 72, unknown 59.2
1833 Male, age 53, unknown 58.3
1830 Male, age 51, unknown 53.0
2586 Male, age 75, left hemisphere 49.8
1870 Female, age 42, unknown 47.3
2019 Male, age 18, unknown 45.4
2411 Female, age 72, unknown 44.6
2219 Male, age 76, both hemispheres 38.1
Dorsal raphe nucleus
nTPM: 65.4
2298 Female, age 72, unknown 82.1
2016 Female, age 72, unknown 76.3
2047 Male, age 72, unknown 58.0
2750 Male, age 76, both hemispheres 56.4
1828 Male, age 53, unknown 54.0
Inferior colliculus
nTPM: 50.8
2849 Male, age 72, unknown 53.0
2097 Female, age 72, unknown 52.6
1848 Female, age 42, unknown 48.9
1890 Male, age 53, unknown 48.9
Median raphe nucleus
nTPM: 72.8
2220 Male, age 76, midline 72.8
Periaquaductal grey, anterior
nTPM: 68.3
1795 Male, age 51, unknown 83.3
1947 Male, age 18, unknown 64.7
2502 Female, age 75, unknown 56.8
Periaquaductal grey, dorsal
nTPM: 75.3
2850 Male, age 76, both hemispheres 101.6
1831 Male, age 72, unknown 70.4
1840 Male, age 53, unknown 69.4
2464 Female, age 72, unknown 59.7
Periaquaductal grey, lateral
nTPM: 84.4
2272 Male, age 74, both hemispheres 94.3
2140 Male, age 76, both hemispheres 87.9
2053 Male, age 18, unknown 71.1
Pretectal area
nTPM: 64.9
2273 Male, age 74, both hemispheres 84.2
2224 Female, age 72, unknown 78.3
1944 Female, age 72, unknown 71.6
2825 Male, age 18, unknown 66.1
2407 Male, age 75, both hemispheres 65.0
2667 Female, age 75, unknown 62.5
2316 Male, age 76, right hemisphere 61.4
1815 Male, age 53, unknown 59.4
2007 Male, age 72, unknown 57.5
1817 Female, age 42, unknown 54.5
1816 Male, age 51, unknown 53.7
Red nucleus
nTPM: 41.5
2584 Male, age 75, left hemisphere 59.2
2725 Female, age 75, unknown 51.5
2588 Male, age 74, left hemisphere 43.6
2785 Male, age 18, unknown 42.6
2823 Male, age 76, right hemisphere 42.2
1865 Male, age 51, unknown 39.6
1904 Male, age 53, unknown 39.5
2227 Male, age 72, unknown 39.0
2769 Male, age 72, unknown 38.2
2503 Female, age 72, unknown 37.6
1954 Female, age 42, unknown 33.0
1821 Female, age 72, unknown 32.5
Substantia nigra
nTPM: 76.2
2699 Male, age 18, unknown 94.0
1916 Female, age 42, unknown 87.4
2665 Male, age 74, both hemispheres 87.0
2241 Male, age 72, unknown 80.0
2590 Female, age 75, unknown 78.5
1941 Male, age 53, unknown 77.0
1851 Male, age 51, unknown 73.0
2583 Male, age 75, right hemisphere 66.3
2409 Female, age 72, unknown 65.3
1889 Female, age 72, unknown 53.0
Superior colliculus
nTPM: 59.2
1995 Male, age 72, unknown 68.7
1796 Male, age 53, unknown 67.9
2087 Female, age 72, unknown 63.4
2261 Male, age 18, unknown 62.1
2587 Male, age 74, left hemisphere 61.2
2664 Male, age 75, both hemispheres 59.4
1839 Male, age 51, unknown 58.0
1913 Female, age 42, unknown 56.1
2668 Female, age 75, unknown 54.6
1895 Male, age 76, right hemisphere 40.3
Ventral tegmental area
nTPM: 66.3
1915 Female, age 42, unknown 77.3
2021 Male, age 53, unknown 73.5
2218 Male, age 76, both hemispheres 71.3
1942 Male, age 51, unknown 67.7
2410 Female, age 72, unknown 55.8
2223 Female, age 72, unknown 51.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 6.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 6.0
Samples: 183

Max nTPM: 11.5
Min nTPM: 2.0
Std nTPM: 1.6
Median nTPM: 6.1
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 11.5
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 10.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 10.0
GTEX-111FC-0011-R2a-SM-GIN8S 60-69 years, male 9.9
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 9.8
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 9.2
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 8.9
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 8.8
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 8.8
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 8.8
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 8.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.7
FF:10158-103A5 76 years, female 43.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 27.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 27.5
Samples: 4

Max nTPM: 33.2
Min nTPM: 22.7
Sample A Female 22.7
Sample B Female 33.2
Sample C Male 28.1
Sample D Male 25.9
Midbrain
nTPM: 20.8
Samples: 4

Max nTPM: 24.8
Min nTPM: 15.4
Sample A Female 24.8
Sample B Female 24.1
Sample C Male 18.9
Sample D Male 15.4
Periaqueductal gray
nTPM: 24.1
Samples: 3

Max nTPM: 26.3
Min nTPM: 21.9
Sample B Female 24.0
Sample C Male 26.3
Sample D Male 21.9
Superior colliculi
nTPM: 22.1
Samples: 4

Max nTPM: 30.1
Min nTPM: 18.0
Sample A Female 19.3
Sample B Female 30.1
Sample C Male 18.0
Sample D Male 21.1

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 4.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.8
Samples: 4

Max nTPM: 5.4
Min nTPM: 4.0
Sample A Male 4.0
Sample B Male 5.4
Sample C Female 5.3
Sample D Female 4.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
71574383 Antisense, RP_050915_03_F05, Mouse strain C57BL/6J (56 days, male) 0.7

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