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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

  • CELL LINE

  • STRUCTURE

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  • RPS9
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:682.7 nTPM
FANTOM5:105.2 Scaled Tags Per Million
Pig:248.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA048746
Glial cells Not detected
Neuronal cells Low


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

682.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 682.7
Samples: 300

Max nTPM: 2148.2
Min nTPM: 321.7
Std nTPM: 228.5
Median nTPM: 628.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 2148.2
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1687.0
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1648.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1492.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1341.7
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1340.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1279.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1264.4
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1231.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1229.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1145.9
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1092.6
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1072.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1072.3
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1062.1
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1039.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 1033.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1033.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 1021.3
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 1020.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1013.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1007.0
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 997.5
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 990.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 982.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 981.5
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 970.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 964.3
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 959.7
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 956.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 954.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 949.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 947.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 945.6
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 934.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 932.5
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 931.8
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 929.7
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 920.8
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 917.6
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 909.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 909.0
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 908.0
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 906.7
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 900.4
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 896.8
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 889.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 889.1
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 879.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 879.4
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 854.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 853.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 846.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 845.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 844.0
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 839.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 839.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 835.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 834.9
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 831.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 830.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 830.3
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 828.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 827.5
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 815.9
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 813.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 812.1
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 807.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 805.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 801.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 793.3
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 792.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 791.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 789.0
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 783.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 783.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 780.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 779.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 778.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 775.2
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 771.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 768.9
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 768.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 767.3
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 767.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 767.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 766.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 766.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 765.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 762.6
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 755.6
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 751.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 746.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 742.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 740.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 740.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 736.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 732.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 724.2
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 722.9
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 720.0
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 718.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 712.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 711.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 710.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 710.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 709.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 708.9
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 706.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 705.7
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 705.2
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 702.5
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 700.7
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 699.3
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 699.2
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 697.6
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 692.2
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 691.5
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 688.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 687.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 684.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 681.6
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 681.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 681.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 679.6
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 676.6
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 675.0
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 675.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 674.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 667.9
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 667.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 665.4
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 665.3
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 662.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 660.3
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 658.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 658.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 656.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 654.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 653.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 651.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 648.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 642.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 640.3
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 636.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 634.2
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 630.3
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 630.3
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 629.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 628.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 627.9
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 627.3
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 626.4
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 622.8
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 622.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 622.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 620.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 620.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 620.2
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 616.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 614.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 614.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 613.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 612.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 611.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 608.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 607.7
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 601.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 601.7
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 597.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 594.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 593.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 593.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 592.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 592.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 590.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 587.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 586.6
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 581.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 580.7
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 579.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 579.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 579.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 575.6
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 575.4
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 575.3
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 575.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 573.9
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 571.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 570.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 570.5
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 570.1
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 569.6
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 569.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 567.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 563.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 562.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 562.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 561.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 559.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 557.4
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 555.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 555.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 554.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 551.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 551.3
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 550.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 549.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 547.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 546.6
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 545.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 545.0
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 544.3
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 542.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 541.2
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 540.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 540.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 540.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 540.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 539.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 538.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 534.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 534.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 531.2
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 530.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 529.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 529.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 524.8
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 522.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 517.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 515.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 514.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 514.0
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 510.6
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 508.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 507.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 506.2
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 504.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 504.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 503.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 501.3
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 500.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 498.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 498.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 497.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 493.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 491.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 490.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 489.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 488.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 488.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 487.5
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 484.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 484.1
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 482.4
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 482.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 480.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 479.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 478.9
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 478.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 477.5
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 477.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 476.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 475.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 475.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 474.4
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 474.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 468.1
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 466.6
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 466.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 464.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 463.1
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 461.7
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 461.1
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 459.8
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 457.6
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 456.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 452.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 450.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 449.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 449.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 442.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 442.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 438.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 435.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 433.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 431.5
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 431.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 420.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 418.8
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 410.0
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 407.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 393.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 388.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 378.0
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 367.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 366.2
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 334.1
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 330.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 321.7
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

105.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 105.2
FF:10164-103B2 76 years, female 105.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

248.3
Pig sample Sample description nTPM
Caudate
nTPM: 248.3
Samples: 4

Max nTPM: 266.1
Min nTPM: 214.0
Sample A Female 266.1
Sample B Female 257.7
Sample C Male 255.4
Sample D Male 214.0

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