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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:138.7 nTPM
HPA Brain:149.0 nTPM
GTEx:138.7 nTPM
FANTOM5:275.8 Scaled Tags Per Million
Pig:97.6 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

149.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 128.0
1981 Female, age 72, midline 153.2
2048 Male, age 55, midline 132.7
2816 Male, age 47, midline 129.9
2194 Female, age 79, both hemispheres 118.7
2565 Male, age 75, midline 105.4
Cervical spinal cord, dorsal horn
nTPM: 130.7
2296 Male, age 66, both hemispheres 210.2
2173 Female, age 72, unknown 184.3
2069 Male, age 47, both hemispheres 133.2
1877 Male, age 55, unknown 100.2
2297 Male, age 75, both hemispheres 82.5
2721 Male, age 90, both hemispheres 73.8
Cervical spinal cord, ventral horn
nTPM: 149.0
2480 Male, age 75, both hemispheres 168.8
2098 Female, age 72, unknown 164.5
2295 Male, age 66, both hemispheres 147.7
2068 Male, age 55, unknown 147.3
2809 Male, age 90, both hemispheres 134.5
2820 Female, age 79, both hemispheres 131.1

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

138.7
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 138.7
Samples: 204

Max nTPM: 292.9
Min nTPM: 38.0
Std nTPM: 47.3
Median nTPM: 137.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 292.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 267.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 249.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 247.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 233.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 232.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 230.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 228.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 225.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 222.5
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 219.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 219.3
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 218.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 211.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 208.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 207.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 205.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 203.2
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 202.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 201.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 200.9
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 198.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 196.8
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 196.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 192.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 190.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 190.8
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 188.0
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 187.9
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 187.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 187.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 184.8
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 183.7
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 182.6
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 181.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 179.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 178.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 177.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 177.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 177.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 177.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 176.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 176.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 175.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 175.1
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 175.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 174.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 173.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 172.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 170.3
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 169.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 168.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 168.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 168.0
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 166.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 165.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 164.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 164.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 164.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 164.1
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 164.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 162.7
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 161.0
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 160.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 159.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 159.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 158.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 158.4
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 156.0
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 153.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 153.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 153.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 153.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 152.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 152.6
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 152.4
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 152.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 150.8
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 149.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 149.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 149.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 149.1
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 148.1
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 147.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 146.8
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 146.1
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 146.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 145.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 144.9
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 144.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 143.8
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 143.0
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 143.0
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 141.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 141.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 140.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 139.7
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 139.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 138.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 138.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 137.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 137.0
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 136.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 136.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 135.3
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 134.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 133.6
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 133.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 132.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 132.2
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 131.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 130.7
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 130.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 129.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 129.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 129.3
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 128.8
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 128.7
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 128.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 128.0
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 127.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 127.5
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 125.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 124.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 123.5
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 122.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 122.4
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 122.3
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 121.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 121.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 120.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 119.8
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 119.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 118.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 118.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 118.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 117.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 117.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 117.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 116.8
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 116.7
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 116.7
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 116.3
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 116.0
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 115.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 113.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 113.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 112.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 110.8
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 109.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 109.2
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 106.9
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 104.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 104.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 103.8
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 102.4
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 102.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 101.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 100.6
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 99.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 99.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 99.2
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 98.2
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 98.0
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 97.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 95.7
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 94.4
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 92.7
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 92.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 92.0
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 92.0
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 91.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 90.5
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 89.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 85.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 84.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 83.6
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 80.4
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 80.4
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 78.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 78.6
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 78.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 76.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 75.2
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 74.6
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 69.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 68.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 67.8
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 67.4
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 64.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 64.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 62.8
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 61.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 60.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 59.5
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 54.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 54.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 48.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 45.3
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 43.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 41.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 40.8
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 38.0
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

275.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 275.8
FF:10181-103D1 60 years, female 321.0
FF:10159-103A6 76 years, female 230.6

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

97.6
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 73.5
Samples: 4

Max nTPM: 81.5
Min nTPM: 60.7
Sample A Female 60.7
Sample B Female 80.5
Sample C Male 71.4
Sample D Male 81.5
Ventral spinal cord
nTPM: 97.6
Samples: 4

Max nTPM: 104.1
Min nTPM: 91.1
Sample A Female 93.3
Sample B Female 104.1
Sample C Male 91.1
Sample D Male 101.9

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