MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:166.6 nTPM
HPA Brain:101.5 nTPM
GTEx:166.6 nTPM
FANTOM5:89.0 Scaled Tags Per Million
Mouse:47.4 nTPM
Allen mouse:3.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 87.6
2666 Male, age 74, left hemisphere 137.1
2828 Female, age 72, unknown 116.1
2586 Male, age 75, left hemisphere 106.2
2019 Male, age 18, unknown 103.2
1827 Male, age 72, unknown 95.9
2219 Male, age 76, both hemispheres 82.3
1870 Female, age 42, unknown 62.5
1833 Male, age 53, unknown 58.9
1830 Male, age 51, unknown 57.3
2411 Female, age 72, unknown 56.0
Dorsal raphe nucleus
nTPM: 80.9
1828 Male, age 53, unknown 110.7
2047 Male, age 72, unknown 92.6
2298 Female, age 72, unknown 76.8
2750 Male, age 76, both hemispheres 65.2
2016 Female, age 72, unknown 59.3
Inferior colliculus
nTPM: 72.9
2849 Male, age 72, unknown 77.3
1848 Female, age 42, unknown 75.8
1890 Male, age 53, unknown 74.1
2097 Female, age 72, unknown 64.4
Median raphe nucleus
nTPM: 77.4
2220 Male, age 76, midline 77.4
Periaquaductal grey, anterior
nTPM: 74.5
1795 Male, age 51, unknown 96.5
1947 Male, age 18, unknown 67.3
2502 Female, age 75, unknown 59.7
Periaquaductal grey, dorsal
nTPM: 61.9
2850 Male, age 76, both hemispheres 66.1
1831 Male, age 72, unknown 65.2
1840 Male, age 53, unknown 59.4
2464 Female, age 72, unknown 57.0
Periaquaductal grey, lateral
nTPM: 56.7
2272 Male, age 74, both hemispheres 64.1
2053 Male, age 18, unknown 59.9
2140 Male, age 76, both hemispheres 46.3
Pretectal area
nTPM: 93.3
1817 Female, age 42, unknown 160.1
1816 Male, age 51, unknown 142.8
2007 Male, age 72, unknown 137.7
1815 Male, age 53, unknown 119.8
1944 Female, age 72, unknown 112.3
2667 Female, age 75, unknown 72.9
2825 Male, age 18, unknown 66.5
2224 Female, age 72, unknown 61.3
2407 Male, age 75, both hemispheres 58.9
2273 Male, age 74, both hemispheres 48.6
2316 Male, age 76, right hemisphere 45.9
Red nucleus
nTPM: 77.0
2588 Male, age 74, left hemisphere 133.5
2785 Male, age 18, unknown 101.5
2584 Male, age 75, left hemisphere 91.2
2725 Female, age 75, unknown 77.6
2503 Female, age 72, unknown 76.1
1821 Female, age 72, unknown 74.4
2823 Male, age 76, right hemisphere 70.2
1865 Male, age 51, unknown 64.5
2769 Male, age 72, unknown 61.2
2227 Male, age 72, unknown 59.9
1954 Female, age 42, unknown 58.8
1904 Male, age 53, unknown 55.0
Substantia nigra
nTPM: 101.5
2665 Male, age 74, both hemispheres 148.1
1916 Female, age 42, unknown 122.6
2583 Male, age 75, right hemisphere 114.2
1889 Female, age 72, unknown 112.4
1851 Male, age 51, unknown 111.3
1941 Male, age 53, unknown 111.0
2409 Female, age 72, unknown 87.2
2699 Male, age 18, unknown 84.0
2241 Male, age 72, unknown 66.9
2590 Female, age 75, unknown 57.2
Superior colliculus
nTPM: 94.2
2668 Female, age 75, unknown 206.9
1796 Male, age 53, unknown 104.2
2087 Female, age 72, unknown 97.4
1913 Female, age 42, unknown 87.7
1995 Male, age 72, unknown 80.2
2261 Male, age 18, unknown 79.9
2664 Male, age 75, both hemispheres 76.8
2587 Male, age 74, left hemisphere 72.2
1839 Male, age 51, unknown 68.4
1895 Male, age 76, right hemisphere 67.9
Ventral tegmental area
nTPM: 81.9
2223 Female, age 72, unknown 105.5
1915 Female, age 42, unknown 100.3
2218 Male, age 76, both hemispheres 81.8
2410 Female, age 72, unknown 75.2
1942 Male, age 51, unknown 69.2
2021 Male, age 53, unknown 59.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 166.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 166.6
Samples: 183

Max nTPM: 401.8
Min nTPM: 57.0
Std nTPM: 65.5
Median nTPM: 154.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 401.8
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 354.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 346.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 345.1
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 344.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 331.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 328.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 327.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 314.9
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 312.4
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 304.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 89.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 89.0
FF:10158-103A5 76 years, female 89.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 58.8
Min nTPM: 32.2
Sample A Male 58.8
Sample B Male 43.1
Sample C Female 32.2
Sample D Female 55.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.6
68631948 Antisense, RP_050125_01_D08, Mouse strain C57BL/6J (56 days, male) 4.0
71015816 Antisense, RP_050725_02_H12, Mouse strain C57BL/6J (56 days, male) 3.2

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