We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SCAND1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SCAND1
TISSUE VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:57.1 nTPM
GTEx:57.1 nTPM
FANTOM5:59.9 Scaled Tags Per Million

VAGINA - Annotated protein expression
Pending normal tissue analysis

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

57.1
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 57.1
Samples: 170

Max nTPM: 230.3
Min nTPM: 26.9
Std nTPM: 19.1
Median nTPM: 54.2
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 230.3
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 109.4
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 95.5
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 91.1
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 90.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 90.5
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 89.0
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 84.1
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 83.2
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 82.1
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 79.3
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 78.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 76.7
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 76.6
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 74.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 73.2
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 73.2
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 73.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 72.9
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 72.8
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 72.7
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 71.9
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 71.8
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 71.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 70.2
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 70.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 69.9
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 69.5
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 69.2
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 68.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 68.5
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 68.0
GTEX-11I78-2026-SM-5987C 50-59 years, female 67.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 67.7
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 67.5
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 66.6
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 66.4
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 65.9
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 65.7
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 65.2
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 64.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 64.2
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 64.1
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 63.9
GTEX-S341-1226-SM-4AD5S 40-49 years, female 63.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 63.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 62.6
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 62.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 62.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 62.5
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 61.6
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 61.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 60.8
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 60.7
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 60.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 60.6
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 60.5
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 60.5
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 60.4
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 60.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 60.1
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 60.1
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 59.9
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 59.9
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 59.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 59.8
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 59.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 59.3
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 59.1
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 58.9
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 58.7
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 58.4
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 57.4
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 57.4
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 57.3
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 56.7
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 55.5
GTEX-14PKU-1326-SM-6871B 40-49 years, female 55.4
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 55.4
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 55.1
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 54.8
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 54.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 54.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 54.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 54.3
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 54.1
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 54.1
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 54.0
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 53.7
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 53.5
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 53.2
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 53.1
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 53.0
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 52.6
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 52.3
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 52.3
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 51.9
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 51.7
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 51.5
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 51.4
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 51.4
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 51.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 51.1
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 51.0
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 50.8
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 50.6
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 50.6
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 50.2
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 50.1
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 50.1
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 50.0
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 50.0
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 49.7
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 49.4
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 49.3
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 49.3
GTEX-QCQG-1226-SM-48U23 50-59 years, female 49.1
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 48.9
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 48.8
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 48.7
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 48.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 48.0
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 47.4
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 47.4
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 47.1
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 47.0
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 46.6
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 46.6
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 46.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 46.5
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 46.5
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 45.8
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 45.6
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 45.3
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 45.0
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 44.7
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 44.6
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 44.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 44.0
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 43.9
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 43.7
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 43.0
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 42.9
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 42.3
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 41.7
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 41.6
GTEX-16NPV-2526-SM-6M483 50-59 years, female 41.3
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 41.1
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 41.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 40.2
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 40.0
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 40.0
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 39.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 38.9
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 38.6
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 38.2
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 38.0
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 37.9
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 37.8
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 37.8
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 37.2
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 36.9
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 36.6
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 36.5
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 36.4
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 36.0
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 35.9
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 32.0
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 30.5
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 26.9
Show allShow less

VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 59.9
FF:10204-103F6 68 years, female 59.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo