HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
RNA expressioni
Consensus:8.7 nTPM
HPA Brain:40.0 nTPM
GTEx:8.7 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:22.3 nTPM
Mouse:33.1 nTPM
Allen mouse:6.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA052828
Glial cells Not detected
Neuronal cells Medium



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 40.0
Sample id Sample description nTPM
Hippocampus
nTPM: 40.0
1855 Male, age 76, left hemisphere 43.7
2148 Female, age 91, left hemisphere 43.1
2529 Female, age 94, left hemisphere 40.4
2621 Female, age 67, right hemisphere 39.5
1911 Female, age 85, right hemisphere 36.9
1898 Male, age 80, left hemisphere 36.5
Dentate gyrus
nTPM: 39.7
2530 Female, age 94, left hemisphere 44.5
2246 Female, age 85, both hemispheres 42.3
1927 Female, age 91, both hemispheres 40.7
2531 Female, age 67, both hemispheres 39.3
2010 Male, age 76, both hemispheres 37.0
2528 Male, age 74, both hemispheres 34.6
Entorhinal gyrus
nTPM: 31.1
2117 Female, age 91, right hemisphere 37.2
2686 Male, age 75, right hemisphere 33.6
2613 Female, age 94, left hemisphere 31.7
1787 Male, age 76, left hemisphere 29.7
2764 Male, age 80, right hemisphere 27.5
1938 Female, age 85, left hemisphere 26.8
Hippocampus, CA1
nTPM: 36.8
2045 Male, age 76, both hemispheres 42.5
1873 Female, age 85, both hemispheres 40.7
2082 Female, age 91, right hemisphere 38.1
2527 Male, age 74, both hemispheres 35.0
2749 Male, age 80, left hemisphere 27.7
Hippocampus, CA2
nTPM: 38.7
1963 Male, age 80, left hemisphere 44.4
2437 Female, age 94, left hemisphere 43.2
1940 Female, age 85, left hemisphere 42.1
2113 Female, age 91, right hemisphere 35.3
2249 Male, age 74, both hemispheres 35.1
1892 Male, age 76, both hemispheres 32.0
Hippocampus, CA3
nTPM: 38.1
2436 Male, age 74, both hemispheres 51.6
2861 Female, age 67, both hemispheres 48.0
2620 Female, age 94, left hemisphere 33.6
1867 Male, age 76, both hemispheres 32.9
2137 Male, age 80, left hemisphere 32.0
1891 Female, age 85, both hemispheres 30.6
Parahippocampal cortex
nTPM: 30.9
2018 Male, age 76, both hemispheres 40.2
2250 Female, age 67, right hemisphere 37.6
2622 Female, age 67, right hemisphere 37.5
2245 Female, age 91, both hemispheres 32.6
1933 Female, age 85, both hemispheres 31.8
2692 Male, age 74, both hemispheres 30.8
2532 Female, age 72, left hemisphere 27.6
2693 Female, age 94, both hemispheres 26.5
1990 Female, age 91, right hemisphere 23.5
1850 Male, age 80, both hemispheres 20.9
Perirhinal gyrus
nTPM: 24.8
1847 Female, age 91, left hemisphere 27.7
2521 Female, age 94, right hemisphere 27.0
1794 Male, age 80, right hemisphere 24.5
1841 Female, age 85, right hemisphere 23.0
2848 Male, age 76, right hemisphere 22.0
Subiculum
nTPM: 35.4
2729 Female, age 91, right hemisphere 44.5
2042 Male, age 76, both hemispheres 38.1
2619 Male, age 74, both hemispheres 37.5
2438 Female, age 94, left hemisphere 32.5
1901 Male, age 80, both hemispheres 30.0
1977 Female, age 85, both hemispheres 29.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 8.7
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 8.7
Samples: 255

Max nTPM: 17.0
Min nTPM: 3.4
Std nTPM: 2.6
Median nTPM: 8.3
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 17.0
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 16.6
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 16.2
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 16.2
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 16.2
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 15.8
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 15.8
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 14.7
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 14.3
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 14.3
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 14.0
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.6
FF:10153-102I9 76 years, female 53.6
FF:10169-103B7 60 years, female 43.6

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 22.3
Pig sample Sample description nTPM
Subiculum
nTPM: 15.4
Samples: 4

Max nTPM: 17.9
Min nTPM: 13.8
Sample A Female 17.9
Sample B Female 13.8
Sample C Male 15.5
Sample D Male 14.5
Dorsal hippocampus
nTPM: 16.2
Samples: 4

Max nTPM: 17.9
Min nTPM: 11.8
Sample A Female 17.9
Sample B Female 17.7
Sample C Male 11.8
Sample D Male 17.3
Entorhinal cortex
nTPM: 13.0
Samples: 4

Max nTPM: 16.6
Min nTPM: 10.5
Sample A Female 13.4
Sample B Female 10.5
Sample C Male 16.6
Sample D Male 11.6
Ventral hippocampus
nTPM: 22.3
Samples: 4

Max nTPM: 30.7
Min nTPM: 14.5
Sample A Female 29.2
Sample B Female 14.9
Sample C Male 30.7
Sample D Male 14.5

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 33.1
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 20.3
Samples: 4

Max nTPM: 23.7
Min nTPM: 16.1
Sample A Male 18.1
Sample B Male 16.1
Sample C Female 23.2
Sample D Female 23.7
Hippocampal formation
nTPM: 33.1
Samples: 4

Max nTPM: 42.1
Min nTPM: 26.8
Sample A Male 26.8
Sample B Male 33.1
Sample C Female 42.1
Sample D Female 30.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 6.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 6.0
71021154 Antisense, RP_050526_02_H07, Mouse strain C57BL/6J (56 days, male) 7.2
73931625 Antisense, RP_051214_04_A05, Mouse strain C57BL/6J (56 days, male) 4.7

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