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  • TCEA2
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:64.9 nTPM
HPA Brain:77.9 nTPM
GTEx:64.9 nTPM
FANTOM5:41.3 Scaled Tags Per Million
Pig:71.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.9
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 77.9
2194 Female, age 79, both hemispheres 90.8
2565 Male, age 75, midline 89.6
1981 Female, age 72, midline 76.2
2816 Male, age 47, midline 68.9
2048 Male, age 55, midline 64.2
Cervical spinal cord, dorsal horn
nTPM: 70.6
2297 Male, age 75, both hemispheres 76.3
2173 Female, age 72, unknown 75.6
2721 Male, age 90, both hemispheres 73.6
1877 Male, age 55, unknown 68.5
2069 Male, age 47, both hemispheres 66.1
2296 Male, age 66, both hemispheres 63.5
Cervical spinal cord, ventral horn
nTPM: 76.6
2820 Female, age 79, both hemispheres 86.5
2068 Male, age 55, unknown 86.0
2480 Male, age 75, both hemispheres 80.5
2295 Male, age 66, both hemispheres 79.5
2809 Male, age 90, both hemispheres 69.6
2098 Female, age 72, unknown 57.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

64.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.9
Samples: 204

Max nTPM: 123.5
Min nTPM: 34.7
Std nTPM: 14.4
Median nTPM: 63.1
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 123.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 118.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 110.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 103.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 103.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 99.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 97.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 96.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 95.1
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 93.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 91.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 91.3
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 90.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 88.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 87.6
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 87.3
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 87.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 86.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 85.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 82.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 82.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 82.0
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 81.8
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 81.7
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 79.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 79.1
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 78.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 77.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 77.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 76.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 76.2
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 75.9
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 75.8
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 75.3
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 75.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 75.0
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 74.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 74.5
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 74.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 74.2
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 74.0
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 73.8
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 73.7
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.6
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 73.6
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 73.2
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 72.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 72.7
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 72.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 72.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 72.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 72.0
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 71.7
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 71.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 71.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 71.4
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 71.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 71.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 70.8
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 70.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 70.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 70.2
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 70.2
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 70.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.1
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 70.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 69.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 69.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 69.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 69.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 69.1
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 69.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 68.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 68.3
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 67.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 67.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 67.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 67.5
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 67.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 67.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 67.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 66.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 66.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 66.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 66.4
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 66.3
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.3
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 66.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 65.6
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 65.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 65.5
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 65.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 65.2
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 65.1
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 64.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 64.6
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 64.1
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 63.7
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 63.5
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 63.3
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 63.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 63.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 62.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 62.4
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 62.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 62.2
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 62.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 62.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 61.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 61.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 61.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 61.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 61.1
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 61.1
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 61.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 60.9
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 60.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 60.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 60.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 60.1
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 60.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 59.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 59.6
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 59.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 59.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 59.3
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 59.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 59.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 59.0
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 58.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 58.8
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 58.7
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.6
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 58.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 58.4
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 58.3
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 58.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 57.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 57.7
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 57.6
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 57.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 57.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 57.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 57.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 57.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 57.0
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 56.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 55.5
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 55.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 55.4
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 55.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 55.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 55.0
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 54.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 54.1
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 53.7
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 53.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 53.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 53.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 53.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 53.0
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 53.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 52.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 52.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 52.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 52.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 52.3
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 52.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 51.6
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 51.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 51.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 51.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 51.0
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 50.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 50.2
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 50.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 49.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 49.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 49.4
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 49.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 48.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 48.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 47.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 46.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 46.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 46.6
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 46.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 46.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 45.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 44.4
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 44.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 43.7
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 43.6
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 43.1
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 42.0
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 40.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 39.9
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 39.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 39.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 38.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 34.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 41.3
FF:10181-103D1 60 years, female 43.1
FF:10159-103A6 76 years, female 39.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

71.7
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 71.3
Samples: 4

Max nTPM: 87.1
Min nTPM: 57.8
Sample A Female 87.1
Sample B Female 57.8
Sample C Male 61.8
Sample D Male 78.3
Ventral spinal cord
nTPM: 71.7
Samples: 4

Max nTPM: 82.3
Min nTPM: 61.5
Sample A Female 71.0
Sample B Female 72.0
Sample C Male 82.3
Sample D Male 61.5

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