MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:65.2 nTPM
HPA Brain:103.2 nTPM
GTEx:65.2 nTPM
FANTOM5:61.1 Scaled Tags Per Million
Pig:95.8 nTPM
Mouse:141.3 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 103.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 71.7
2019 Male, age 18, unknown 89.1
1827 Male, age 72, unknown 77.0
2666 Male, age 74, left hemisphere 76.7
1870 Female, age 42, unknown 74.1
1833 Male, age 53, unknown 71.4
1830 Male, age 51, unknown 69.6
2219 Male, age 76, both hemispheres 69.1
2411 Female, age 72, unknown 66.2
2586 Male, age 75, left hemisphere 66.1
2828 Female, age 72, unknown 58.1
Dorsal raphe nucleus
nTPM: 75.2
1828 Male, age 53, unknown 81.1
2047 Male, age 72, unknown 79.2
2016 Female, age 72, unknown 74.0
2298 Female, age 72, unknown 73.3
2750 Male, age 76, both hemispheres 68.6
Inferior colliculus
nTPM: 103.2
2097 Female, age 72, unknown 112.4
2849 Male, age 72, unknown 107.9
1848 Female, age 42, unknown 106.0
1890 Male, age 53, unknown 86.4
Median raphe nucleus
nTPM: 71.3
2220 Male, age 76, midline 71.3
Periaquaductal grey, anterior
nTPM: 67.2
1947 Male, age 18, unknown 71.2
2502 Female, age 75, unknown 65.9
1795 Male, age 51, unknown 64.4
Periaquaductal grey, dorsal
nTPM: 73.7
2850 Male, age 76, both hemispheres 77.1
1840 Male, age 53, unknown 76.7
2464 Female, age 72, unknown 75.4
1831 Male, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 62.4
2140 Male, age 76, both hemispheres 68.5
2053 Male, age 18, unknown 61.3
2272 Male, age 74, both hemispheres 57.4
Pretectal area
nTPM: 83.9
1817 Female, age 42, unknown 109.3
2007 Male, age 72, unknown 103.5
1944 Female, age 72, unknown 97.5
1816 Male, age 51, unknown 86.2
1815 Male, age 53, unknown 81.6
2667 Female, age 75, unknown 81.6
2316 Male, age 76, right hemisphere 78.2
2224 Female, age 72, unknown 72.9
2273 Male, age 74, both hemispheres 72.3
2825 Male, age 18, unknown 71.3
2407 Male, age 75, both hemispheres 68.6
Red nucleus
nTPM: 70.0
1821 Female, age 72, unknown 83.6
2785 Male, age 18, unknown 83.6
1954 Female, age 42, unknown 76.0
2823 Male, age 76, right hemisphere 73.4
2725 Female, age 75, unknown 69.6
2584 Male, age 75, left hemisphere 68.9
2769 Male, age 72, unknown 67.8
2227 Male, age 72, unknown 67.6
2588 Male, age 74, left hemisphere 66.5
2503 Female, age 72, unknown 66.3
1865 Male, age 51, unknown 63.2
1904 Male, age 53, unknown 53.3
Substantia nigra
nTPM: 64.3
1941 Male, age 53, unknown 103.9
1889 Female, age 72, unknown 89.4
2665 Male, age 74, both hemispheres 63.8
2241 Male, age 72, unknown 61.7
1916 Female, age 42, unknown 61.4
1851 Male, age 51, unknown 57.2
2699 Male, age 18, unknown 54.6
2583 Male, age 75, right hemisphere 54.1
2590 Female, age 75, unknown 53.7
2409 Female, age 72, unknown 43.0
Superior colliculus
nTPM: 73.5
1895 Male, age 76, right hemisphere 91.3
2668 Female, age 75, unknown 86.9
1839 Male, age 51, unknown 84.7
2664 Male, age 75, both hemispheres 80.8
2087 Female, age 72, unknown 79.2
2587 Male, age 74, left hemisphere 71.6
1796 Male, age 53, unknown 66.6
2261 Male, age 18, unknown 61.2
1995 Male, age 72, unknown 57.8
1913 Female, age 42, unknown 54.6
Ventral tegmental area
nTPM: 60.5
2218 Male, age 76, both hemispheres 64.7
1942 Male, age 51, unknown 63.6
1915 Female, age 42, unknown 63.1
2410 Female, age 72, unknown 59.5
2223 Female, age 72, unknown 57.3
2021 Male, age 53, unknown 55.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 65.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 65.2
Samples: 183

Max nTPM: 168.2
Min nTPM: 28.3
Std nTPM: 22.5
Median nTPM: 61.7
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 168.2
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 148.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 123.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 116.2
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 113.5
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 109.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 108.7
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 108.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 108.0
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 108.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 106.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 61.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 61.1
FF:10158-103A5 76 years, female 61.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 95.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 68.5
Samples: 4

Max nTPM: 79.8
Min nTPM: 59.5
Sample A Female 79.8
Sample B Female 59.5
Sample C Male 70.4
Sample D Male 64.2
Midbrain
nTPM: 87.3
Samples: 4

Max nTPM: 109.1
Min nTPM: 68.2
Sample A Female 68.2
Sample B Female 75.2
Sample C Male 109.1
Sample D Male 96.6
Periaqueductal gray
nTPM: 71.1
Samples: 3

Max nTPM: 75.7
Min nTPM: 66.1
Sample B Female 71.4
Sample C Male 75.7
Sample D Male 66.1
Superior colliculi
nTPM: 95.9
Samples: 4

Max nTPM: 123.0
Min nTPM: 69.8
Sample A Female 93.3
Sample B Female 69.8
Sample C Male 123.0
Sample D Male 97.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 141.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 141.3
Samples: 4

Max nTPM: 155.0
Min nTPM: 125.8
Sample A Male 125.8
Sample B Male 147.3
Sample C Female 155.0
Sample D Female 137.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
69540333 Antisense, RP_050426_01_E08, Mouse strain C57BL/6J (56 days, male) 7.5

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