MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:9.7 nTPM
HPA Brain:35.9 nTPM
GTEx:9.7 nTPM
FANTOM5:10.2 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 34.4
2219 Male, age 76, both hemispheres 43.8
2019 Male, age 18, unknown 39.0
1830 Male, age 51, unknown 38.4
1870 Female, age 42, unknown 37.0
2411 Female, age 72, unknown 34.1
1833 Male, age 53, unknown 33.3
2828 Female, age 72, unknown 31.7
1827 Male, age 72, unknown 31.6
2666 Male, age 74, left hemisphere 31.0
2586 Male, age 75, left hemisphere 24.2
Dorsal raphe nucleus
nTPM: 32.2
2750 Male, age 76, both hemispheres 35.2
2016 Female, age 72, unknown 34.7
2298 Female, age 72, unknown 34.4
1828 Male, age 53, unknown 29.9
2047 Male, age 72, unknown 27.0
Inferior colliculus
nTPM: 30.5
1848 Female, age 42, unknown 31.7
2097 Female, age 72, unknown 31.5
2849 Male, age 72, unknown 29.4
1890 Male, age 53, unknown 29.2
Median raphe nucleus
nTPM: 31.1
2220 Male, age 76, midline 31.1
Periaquaductal grey, anterior
nTPM: 35.9
1947 Male, age 18, unknown 40.3
2502 Female, age 75, unknown 37.1
1795 Male, age 51, unknown 30.5
Periaquaductal grey, dorsal
nTPM: 30.9
1831 Male, age 72, unknown 32.5
2464 Female, age 72, unknown 31.7
2850 Male, age 76, both hemispheres 31.0
1840 Male, age 53, unknown 28.5
Periaquaductal grey, lateral
nTPM: 35.4
2140 Male, age 76, both hemispheres 36.8
2272 Male, age 74, both hemispheres 36.0
2053 Male, age 18, unknown 33.5
Pretectal area
nTPM: 32.2
2316 Male, age 76, right hemisphere 39.5
2273 Male, age 74, both hemispheres 36.6
2407 Male, age 75, both hemispheres 35.8
1815 Male, age 53, unknown 34.3
2224 Female, age 72, unknown 31.9
2825 Male, age 18, unknown 31.9
2007 Male, age 72, unknown 30.6
2667 Female, age 75, unknown 29.2
1817 Female, age 42, unknown 28.7
1944 Female, age 72, unknown 28.6
1816 Male, age 51, unknown 27.3
Red nucleus
nTPM: 34.1
1865 Male, age 51, unknown 40.9
2769 Male, age 72, unknown 36.6
2227 Male, age 72, unknown 36.3
1904 Male, age 53, unknown 36.2
1954 Female, age 42, unknown 35.6
2503 Female, age 72, unknown 34.4
1821 Female, age 72, unknown 33.8
2785 Male, age 18, unknown 33.7
2725 Female, age 75, unknown 32.9
2584 Male, age 75, left hemisphere 31.5
2823 Male, age 76, right hemisphere 30.4
2588 Male, age 74, left hemisphere 27.3
Substantia nigra
nTPM: 34.2
2665 Male, age 74, both hemispheres 45.6
1941 Male, age 53, unknown 38.2
2590 Female, age 75, unknown 35.1
1851 Male, age 51, unknown 34.6
2409 Female, age 72, unknown 33.4
2241 Male, age 72, unknown 33.3
2583 Male, age 75, right hemisphere 33.1
1889 Female, age 72, unknown 31.2
2699 Male, age 18, unknown 30.0
1916 Female, age 42, unknown 27.9
Superior colliculus
nTPM: 34.9
1913 Female, age 42, unknown 43.2
1995 Male, age 72, unknown 40.3
2668 Female, age 75, unknown 36.6
2587 Male, age 74, left hemisphere 35.6
1839 Male, age 51, unknown 34.3
2087 Female, age 72, unknown 33.8
2664 Male, age 75, both hemispheres 32.6
2261 Male, age 18, unknown 32.5
1895 Male, age 76, right hemisphere 30.9
1796 Male, age 53, unknown 29.5
Ventral tegmental area
nTPM: 34.6
2021 Male, age 53, unknown 39.2
2410 Female, age 72, unknown 35.7
2223 Female, age 72, unknown 35.1
1942 Male, age 51, unknown 34.7
2218 Male, age 76, both hemispheres 32.8
1915 Female, age 42, unknown 30.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 9.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 9.7
Samples: 183

Max nTPM: 21.2
Min nTPM: 4.6
Std nTPM: 2.7
Median nTPM: 9.3
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 21.2
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 20.7
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 16.7
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 16.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 15.6
GTEX-16GPK-0011-R2a-SM-GRR1F 60-69 years, male 15.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 15.1
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 14.9
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 14.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 14.4
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 14.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.2
FF:10158-103A5 76 years, female 10.2

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