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  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SCG2
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:111.8 nTPM
FANTOM5:496.9 Scaled Tags Per Million
Pig:98.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA011893Antibody HPA075062
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 111.8
Samples: 300

Max nTPM: 512.9
Min nTPM: 3.8
Std nTPM: 90.6
Median nTPM: 94.3
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 512.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 466.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 414.7
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 397.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 375.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 373.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 365.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 334.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 332.1
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 327.3
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 318.9
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 317.1
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 294.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 284.6
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 280.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 275.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 271.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 267.3
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 263.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 258.1
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 255.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 253.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 250.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 249.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 243.7
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 242.0
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 238.9
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 234.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 234.0
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 233.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 229.6
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 228.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 225.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 225.2
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 219.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 219.2
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 218.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 214.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 212.0
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 211.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 209.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 208.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 207.5
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 202.4
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 201.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 199.5
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 198.9
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 197.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 197.5
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 191.5
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 188.1
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 188.1
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 183.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 183.3
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 182.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 182.2
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 179.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 179.0
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 176.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 176.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 176.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 175.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 172.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 170.0
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 169.8
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 168.5
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 167.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 166.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 166.4
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 163.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 163.5
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 163.0
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 162.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 162.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 161.7
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 161.1
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 160.7
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 160.1
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 159.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 158.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 158.3
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 157.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 157.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 156.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 153.7
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 153.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 153.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 153.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 152.7
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 152.4
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 151.6
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 150.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 149.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 148.1
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 146.9
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 146.1
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 144.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 144.0
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 143.2
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 142.0
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 141.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 139.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 139.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 138.8
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 130.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 130.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 130.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 130.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 130.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 129.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 129.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 126.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 126.1
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 124.0
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 122.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 121.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 121.0
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 119.9
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 119.1
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 117.9
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 117.5
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 116.7
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 116.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 116.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 115.2
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 114.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 112.7
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 111.7
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 111.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 109.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 108.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 105.7
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 105.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 105.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 105.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 104.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 104.3
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 104.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 103.7
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 103.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 101.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 100.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 100.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 99.9
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 99.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 99.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 97.7
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 97.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 95.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 95.1
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 93.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 92.8
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 92.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 92.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 92.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 91.7
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 90.2
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 89.8
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 89.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 88.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 88.2
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 86.9
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 86.1
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 85.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 84.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 84.1
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 79.5
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 79.3
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 78.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 77.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 76.6
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 75.3
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 75.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 74.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 74.5
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 71.8
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 69.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 68.7
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 68.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 68.6
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 66.8
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 66.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 66.7
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 66.6
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 65.6
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 65.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 64.9
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 64.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 64.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 62.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 62.7
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 58.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 58.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 56.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 56.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 55.9
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 55.3
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 55.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 54.5
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 53.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 53.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 52.2
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 51.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 51.2
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 50.9
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 50.7
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 50.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 49.0
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 48.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 47.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 46.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 46.0
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 45.5
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 44.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 42.4
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 41.8
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 41.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 41.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 40.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 39.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 39.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 37.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 36.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 36.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 36.4
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 36.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 35.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 34.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 34.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 32.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 31.8
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 31.7
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 31.7
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 30.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 30.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 29.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 29.5
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.5
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 28.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 27.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 27.5
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 27.0
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 26.4
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 26.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 25.8
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 25.0
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 24.5
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 24.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 23.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 23.0
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 22.9
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 21.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 21.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 21.2
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 20.9
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 20.9
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 20.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 19.9
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 19.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 19.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 19.1
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 19.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 18.9
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 18.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 18.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 17.9
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 17.9
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 17.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 17.7
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 17.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 17.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 16.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 16.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 15.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.9
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 14.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 14.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 13.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 12.1
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 11.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 11.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 11.6
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 11.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 11.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 11.1
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 10.9
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 10.4
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.3
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 10.3
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 9.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 8.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.5
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 7.2
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 7.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 6.9
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 6.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 3.8
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

496.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 496.9
FF:10164-103B2 76 years, female 496.9

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

98.5
Pig sample Sample description nTPM
Caudate
nTPM: 98.5
Samples: 4

Max nTPM: 109.2
Min nTPM: 87.7
Sample A Female 98.2
Sample B Female 87.7
Sample C Male 99.0
Sample D Male 109.2

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