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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
23.3
Sample id
Sample description
nTPM
Amygdala nTPM: 12.9
1987
Female, age 91, left hemisphere
29.6
2514
Male, age 75, right hemisphere
12.0
2517
Female, age 94, left hemisphere
12.0
2814
Male, age 76, right hemisphere
5.8
2695
Female, age 67, right hemisphere
5.2
Basal amygdala nTPM: 11.9
2685
Female, age 94, left hemisphere
16.4
2827
Female, age 67, right hemisphere
14.2
2609
Male, age 75, right hemisphere
13.4
2243
Female, age 91, right hemisphere
13.2
1955
Male, age 76, both hemispheres
8.2
2110
Male, age 80, left hemisphere
5.9
Central amygdala nTPM: 23.3
2701
Female, age 91, right hemisphere
41.4
2515
Male, age 75, right hemisphere
26.3
2239
Male, age 80, left hemisphere
22.6
2826
Female, age 94, left hemisphere
13.5
1905
Male, age 76, both hemispheres
12.9
Corticomedial amygdala nTPM: 12.8
2242
Female, age 91, right hemisphere
15.8
2829
Male, age 80, left hemisphere
14.3
2429
Female, age 94, left hemisphere
12.9
2240
Male, age 76, both hemispheres
12.3
2535
Female, age 67, right hemisphere
10.8
2428
Male, age 75, right hemisphere
10.6
Lateral amygdala nTPM: 9.3
2255
Female, age 91, right hemisphere
15.4
1883
Male, age 76, both hemispheres
11.0
2534
Female, age 94, left hemisphere
9.9
2516
Male, age 75, right hemisphere
9.0
2830
Female, age 67, right hemisphere
7.7
2256
Male, age 80, left hemisphere
3.0
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
44.1
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 44.1
Samples: 181
Max nTPM: 136.6
Min nTPM: 4.5
Std nTPM: 25.2
Median nTPM: 40.0
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
136.6
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
133.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
129.8
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
114.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
112.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
105.8
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
100.6
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
100.5
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
98.2
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
96.9
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
87.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
86.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
82.0
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
79.5
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
77.6
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
77.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
77.3
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
76.7
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
75.8
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
74.6
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
74.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
71.2
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
69.8
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
69.5
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
69.0
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
67.5
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
67.0
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
65.9
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
65.8
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
65.6
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
64.9
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
64.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
63.9
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
63.3
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
63.1
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
62.8
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
62.8
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
62.6
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
61.2
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
61.2
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
61.0
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
60.1
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
60.0
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
59.7
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
59.6
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
58.1
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
56.8
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
56.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
55.7
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
55.0
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
54.2
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
54.1
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
53.8
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
53.0
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
52.8
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
52.5
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
51.4
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
51.4
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
51.0
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
50.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
49.7
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
49.6
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
49.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
49.0
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
48.1
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
47.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
47.9
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
47.5
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
47.3
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
46.5
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
46.4
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
46.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
46.4
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
46.1
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
46.0
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
45.8
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
45.7
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
45.3
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
45.0
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
43.5
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
42.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
42.5
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
42.1
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
41.8
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
41.7
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
41.7
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
41.1
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
40.8
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
40.3
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
40.2
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
40.0
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
39.9
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
39.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
39.1
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
38.2
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
37.9
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
37.5
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
37.0
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
36.6
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
36.1
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
35.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
35.2
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
35.0
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
35.0
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
34.9
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
34.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
34.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
32.8
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
32.7
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
32.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
32.0
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
31.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
31.2
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
30.9
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
30.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
30.3
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
30.2
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
30.2
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
30.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
30.0
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
29.6
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
29.3
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
29.1
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
29.1
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
29.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
28.9
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
28.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
28.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
28.5
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
28.4
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
28.4
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
28.3
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
28.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
28.0
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
27.7
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
27.4
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
27.3
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
26.6
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
26.5
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
26.4
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
25.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
25.6
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
25.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
25.2
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
23.8
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
23.3
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
23.2
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
22.9
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
22.6
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
22.0
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
21.7
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
21.2
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
21.2
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
20.9
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
20.3
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
19.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
18.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
18.1
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
18.1
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
17.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
17.8
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
16.8
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
16.8
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
16.8
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
16.3
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
15.7
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
14.8
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
14.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
12.8
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
12.6
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
11.6
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
10.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
9.0
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
8.6
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
8.6
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
7.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
7.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
7.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
6.1
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
5.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
4.5
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
38.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 38.4
Samples: 4
Max nTPM: 52.5
Min nTPM: 23.6
Sample A
Female
52.5
Sample B
Female
27.3
Sample C
Male
50.3
Sample D
Male
23.6
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
55.1
Mouse sample
Sample description
nTPM
Amygdala nTPM: 55.1
Samples: 4
Max nTPM: 77.0
Min nTPM: 32.6
Sample A
Male
77.0
Sample B
Male
50.3
Sample C
Female
32.6
Sample D
Female
60.4
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
