HIPPOCAMPAL FORMATION - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:29.9 nTPM
HPA Brain:70.2 nTPM
GTEx:29.9 nTPM
FANTOM5:188.8 Scaled Tags Per Million
Pig:54.5 nTPM
Mouse:47.4 nTPM
Allen mouse:1.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPAL FORMATION - Annotated protein expression
Pending normal tissue analysis

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 70.2
Sample id Sample description nTPM
Hippocampus
nTPM: 70.2
1855 Male, age 76, left hemisphere 91.7
2529 Female, age 94, left hemisphere 78.2
2148 Female, age 91, left hemisphere 74.3
1911 Female, age 85, right hemisphere 65.5
1898 Male, age 80, left hemisphere 63.9
2621 Female, age 67, right hemisphere 47.6
Dentate gyrus
nTPM: 50.0
2528 Male, age 74, both hemispheres 66.4
2530 Female, age 94, left hemisphere 56.2
2246 Female, age 85, both hemispheres 54.0
1927 Female, age 91, both hemispheres 47.5
2531 Female, age 67, both hemispheres 39.0
2010 Male, age 76, both hemispheres 37.0
Entorhinal gyrus
nTPM: 48.3
2117 Female, age 91, right hemisphere 76.6
1787 Male, age 76, left hemisphere 56.0
2686 Male, age 75, right hemisphere 48.3
1938 Female, age 85, left hemisphere 41.4
2764 Male, age 80, right hemisphere 36.4
2613 Female, age 94, left hemisphere 31.1
Hippocampus, CA1
nTPM: 51.6
2527 Male, age 74, both hemispheres 70.4
1873 Female, age 85, both hemispheres 67.7
2082 Female, age 91, right hemisphere 49.8
2045 Male, age 76, both hemispheres 40.8
2749 Male, age 80, left hemisphere 29.4
Hippocampus, CA2
nTPM: 55.4
2249 Male, age 74, both hemispheres 73.8
1940 Female, age 85, left hemisphere 64.7
2113 Female, age 91, right hemisphere 62.7
1963 Male, age 80, left hemisphere 53.5
2437 Female, age 94, left hemisphere 44.9
1892 Male, age 76, both hemispheres 32.7
Hippocampus, CA3
nTPM: 48.1
2861 Female, age 67, both hemispheres 58.6
1891 Female, age 85, both hemispheres 57.1
2436 Male, age 74, both hemispheres 53.2
2620 Female, age 94, left hemisphere 52.2
1867 Male, age 76, both hemispheres 35.3
2137 Male, age 80, left hemisphere 32.0
Parahippocampal cortex
nTPM: 42.3
2250 Female, age 67, right hemisphere 57.0
2692 Male, age 74, both hemispheres 52.2
2622 Female, age 67, right hemisphere 48.5
2245 Female, age 91, both hemispheres 46.0
1990 Female, age 91, right hemisphere 43.1
1933 Female, age 85, both hemispheres 39.5
1850 Male, age 80, both hemispheres 39.3
2018 Male, age 76, both hemispheres 35.8
2693 Female, age 94, both hemispheres 35.5
2532 Female, age 72, left hemisphere 25.6
Perirhinal gyrus
nTPM: 42.7
2848 Male, age 76, right hemisphere 49.3
1847 Female, age 91, left hemisphere 43.2
1841 Female, age 85, right hemisphere 43.1
2521 Female, age 94, right hemisphere 39.4
1794 Male, age 80, right hemisphere 38.5
Subiculum
nTPM: 51.3
2729 Female, age 91, right hemisphere 84.5
2619 Male, age 74, both hemispheres 60.0
2438 Female, age 94, left hemisphere 46.7
2042 Male, age 76, both hemispheres 42.7
1977 Female, age 85, both hemispheres 39.3
1901 Male, age 80, both hemispheres 34.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 29.9
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 29.9
Samples: 255

Max nTPM: 90.3
Min nTPM: 5.3
Std nTPM: 15.2
Median nTPM: 27.4
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 90.3
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 87.2
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 84.8
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 82.8
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 74.4
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 64.0
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 62.8
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 61.7
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 60.5
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 59.3
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 58.4
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 188.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 188.8
FF:10153-102I9 76 years, female 271.8
FF:10169-103B7 60 years, female 105.9

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 54.5
Pig sample Sample description nTPM
Subiculum
nTPM: 47.9
Samples: 4

Max nTPM: 66.6
Min nTPM: 36.3
Sample A Female 66.6
Sample B Female 39.0
Sample C Male 36.3
Sample D Male 49.5
Dorsal hippocampus
nTPM: 54.5
Samples: 4

Max nTPM: 74.6
Min nTPM: 42.0
Sample A Female 74.6
Sample B Female 42.0
Sample C Male 52.0
Sample D Male 49.2
Entorhinal cortex
nTPM: 42.4
Samples: 4

Max nTPM: 55.6
Min nTPM: 23.9
Sample A Female 40.5
Sample B Female 49.6
Sample C Male 55.6
Sample D Male 23.9
Ventral hippocampus
nTPM: 52.5
Samples: 4

Max nTPM: 69.4
Min nTPM: 35.1
Sample A Female 69.4
Sample B Female 44.9
Sample C Male 60.5
Sample D Male 35.1

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 47.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 45.5
Samples: 4

Max nTPM: 52.4
Min nTPM: 40.5
Sample A Male 43.2
Sample B Male 40.5
Sample C Female 52.4
Sample D Female 46.0
Hippocampal formation
nTPM: 47.4
Samples: 4

Max nTPM: 50.8
Min nTPM: 42.6
Sample A Male 49.2
Sample B Male 42.6
Sample C Female 47.1
Sample D Female 50.8

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 1.6
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 1.6
73497044 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 3.2
74357547 Antisense, RP_051019_04_B09, Mouse strain C57BL/6J (56 days, male) 1.3
70794013 Antisense, RP_050712_01_B10, Mouse strain C57BL/6J (56 days, male) 0.0

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