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  • SUMMARY

  • TISSUE

  • BRAIN

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  • SUBCELL

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  • BLOOD

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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:549.1 nTPM
FANTOM5:369.0 Scaled Tags Per Million
Pig:34.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA036048Antibody CAB002427
Glial cells Not detectedNot detected
Neuronal cells Not detectedNot detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

549.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 549.1
Samples: 300

Max nTPM: 1961.8
Min nTPM: 175.3
Std nTPM: 236.5
Median nTPM: 486.3
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1961.8
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 1701.0
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1456.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1456.1
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 1395.0
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1295.7
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1262.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1243.5
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1198.8
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1104.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1100.9
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1080.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1054.5
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1048.8
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 1006.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 999.8
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 978.2
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 936.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 935.3
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 933.4
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 913.8
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 905.7
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 896.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 895.7
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 883.2
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 881.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 877.6
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 871.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 869.3
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 866.2
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 846.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 829.5
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 815.8
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 788.7
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 779.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 765.8
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 755.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 752.9
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 751.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 745.4
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 737.7
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 730.3
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 725.3
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 720.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 715.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 714.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 706.6
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 706.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 702.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 700.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 700.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 696.3
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 695.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 692.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 690.4
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 688.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 688.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 687.8
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 673.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 670.9
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 668.9
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 668.1
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 665.4
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 664.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 662.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 657.5
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 654.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 653.8
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 648.2
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 641.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 636.6
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 633.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 625.4
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 625.0
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 621.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 620.2
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 614.9
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 608.7
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 608.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 606.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 605.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 598.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 597.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 594.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 593.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 593.2
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 589.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 588.2
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 588.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 586.9
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 586.7
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 586.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 583.8
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 581.9
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 576.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 573.6
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 571.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 571.1
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 569.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 565.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 564.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 564.6
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 563.3
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 559.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 558.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 556.5
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 556.4
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 551.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 549.3
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 547.8
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 547.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 544.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 543.0
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 541.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 537.7
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 537.1
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 536.0
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 535.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 534.8
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 534.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 533.9
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 532.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 532.8
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 530.8
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 530.4
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 528.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 528.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 526.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 526.8
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 526.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 525.0
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 523.4
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 523.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 522.6
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 522.5
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 521.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 518.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 516.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 515.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 514.9
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 509.8
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 506.3
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 505.8
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 504.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 502.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 498.1
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 496.0
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 494.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 492.9
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 487.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 485.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 483.5
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 483.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 482.4
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 481.3
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 480.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 480.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 480.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 477.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 473.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 471.3
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 470.2
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 466.8
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 466.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 466.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 466.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 462.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 462.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 462.1
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 459.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 457.8
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 455.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 452.7
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 450.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 450.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 450.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 450.0
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 449.4
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 449.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 448.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 447.9
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 447.2
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 446.9
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 446.8
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 446.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 446.2
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 445.9
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 444.9
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 444.8
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 443.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 440.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 440.3
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 440.0
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 436.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 434.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 434.5
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 434.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 433.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 430.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 430.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 429.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 429.7
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 429.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 428.9
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 428.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 426.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 426.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 422.8
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 422.6
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 422.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 421.7
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 421.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 421.1
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 417.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 416.5
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 412.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 412.0
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 411.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 410.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 410.5
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 408.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 405.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 403.4
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 403.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 402.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 401.6
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 400.6
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 399.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 398.7
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 397.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 396.8
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 393.8
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 393.2
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 392.8
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 392.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 392.2
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 390.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 388.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 388.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 388.8
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 384.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 383.3
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 382.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 381.9
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 381.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 378.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 375.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 375.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 374.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 369.6
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 369.5
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 365.0
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 364.9
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 363.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 363.5
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 359.6
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 358.6
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 357.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 356.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 356.0
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 355.8
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 351.8
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 351.5
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 347.3
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 346.9
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 346.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 346.0
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 345.7
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 344.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 343.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 343.1
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 337.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 337.2
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 333.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 333.4
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 332.2
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 329.4
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 327.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 327.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 324.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 324.3
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 320.3
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 316.7
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 311.3
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 311.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 309.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 305.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 287.9
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 281.3
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 276.1
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 275.1
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 273.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 272.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 271.7
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 266.0
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 263.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 249.3
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 248.8
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 179.7
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 175.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

369.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 369.0
FF:10164-103B2 76 years, female 369.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

34.4
Pig sample Sample description nTPM
Caudate
nTPM: 34.5
Samples: 4

Max nTPM: 42.4
Min nTPM: 28.5
Sample A Female 28.5
Sample B Female 35.8
Sample C Male 42.4
Sample D Male 31.1

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