MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:412.7 nTPM
HPA Brain:116.6 nTPM
GTEx:412.7 nTPM
FANTOM5:97.1 Scaled Tags Per Million
Pig:192.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 116.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 82.1
2019 Male, age 18, unknown 144.4
2828 Female, age 72, unknown 94.3
1870 Female, age 42, unknown 92.4
1827 Male, age 72, unknown 88.3
2411 Female, age 72, unknown 88.3
2586 Male, age 75, left hemisphere 85.3
1830 Male, age 51, unknown 63.6
1833 Male, age 53, unknown 59.5
2219 Male, age 76, both hemispheres 54.0
2666 Male, age 74, left hemisphere 51.3
Dorsal raphe nucleus
nTPM: 84.3
2298 Female, age 72, unknown 113.1
2750 Male, age 76, both hemispheres 90.5
1828 Male, age 53, unknown 79.5
2047 Male, age 72, unknown 74.7
2016 Female, age 72, unknown 63.4
Inferior colliculus
nTPM: 74.2
2097 Female, age 72, unknown 95.6
1890 Male, age 53, unknown 89.3
1848 Female, age 42, unknown 62.2
2849 Male, age 72, unknown 49.6
Median raphe nucleus
nTPM: 81.6
2220 Male, age 76, midline 81.6
Periaquaductal grey, anterior
nTPM: 77.0
1795 Male, age 51, unknown 89.4
1947 Male, age 18, unknown 72.0
2502 Female, age 75, unknown 69.5
Periaquaductal grey, dorsal
nTPM: 67.2
2850 Male, age 76, both hemispheres 75.3
1831 Male, age 72, unknown 73.8
1840 Male, age 53, unknown 68.8
2464 Female, age 72, unknown 50.6
Periaquaductal grey, lateral
nTPM: 72.3
2272 Male, age 74, both hemispheres 84.0
2053 Male, age 18, unknown 70.1
2140 Male, age 76, both hemispheres 62.8
Pretectal area
nTPM: 116.6
2007 Male, age 72, unknown 162.5
1817 Female, age 42, unknown 154.7
1816 Male, age 51, unknown 148.0
2273 Male, age 74, both hemispheres 140.4
1944 Female, age 72, unknown 133.5
1815 Male, age 53, unknown 124.3
2667 Female, age 75, unknown 112.7
2316 Male, age 76, right hemisphere 86.8
2224 Female, age 72, unknown 83.1
2407 Male, age 75, both hemispheres 72.9
2825 Male, age 18, unknown 64.1
Red nucleus
nTPM: 95.8
2785 Male, age 18, unknown 130.0
1821 Female, age 72, unknown 117.9
2503 Female, age 72, unknown 111.2
2823 Male, age 76, right hemisphere 101.2
1904 Male, age 53, unknown 99.4
1865 Male, age 51, unknown 97.8
2725 Female, age 75, unknown 92.9
2588 Male, age 74, left hemisphere 92.5
2769 Male, age 72, unknown 85.6
2227 Male, age 72, unknown 84.8
1954 Female, age 42, unknown 74.4
2584 Male, age 75, left hemisphere 61.6
Substantia nigra
nTPM: 96.5
1889 Female, age 72, unknown 136.2
1916 Female, age 42, unknown 126.3
1851 Male, age 51, unknown 116.4
2241 Male, age 72, unknown 97.9
2590 Female, age 75, unknown 94.7
1941 Male, age 53, unknown 88.3
2409 Female, age 72, unknown 81.8
2665 Male, age 74, both hemispheres 81.3
2583 Male, age 75, right hemisphere 73.5
2699 Male, age 18, unknown 68.9
Superior colliculus
nTPM: 94.8
2587 Male, age 74, left hemisphere 120.0
2087 Female, age 72, unknown 113.4
1796 Male, age 53, unknown 104.4
1913 Female, age 42, unknown 104.2
2668 Female, age 75, unknown 102.0
1995 Male, age 72, unknown 95.3
2261 Male, age 18, unknown 94.3
1895 Male, age 76, right hemisphere 81.1
2664 Male, age 75, both hemispheres 75.5
1839 Male, age 51, unknown 57.8
Ventral tegmental area
nTPM: 90.8
1915 Female, age 42, unknown 103.4
2223 Female, age 72, unknown 96.0
2410 Female, age 72, unknown 93.6
1942 Male, age 51, unknown 89.6
2218 Male, age 76, both hemispheres 84.9
2021 Male, age 53, unknown 77.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 412.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 412.7
Samples: 183

Max nTPM: 971.8
Min nTPM: 165.9
Std nTPM: 125.0
Median nTPM: 383.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 971.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 815.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 772.4
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 762.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 742.3
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 740.5
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 740.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 728.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 725.0
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 674.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 660.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 97.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 97.1
FF:10158-103A5 76 years, female 97.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 192.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 173.4
Samples: 4

Max nTPM: 263.3
Min nTPM: 131.8
Sample A Female 263.3
Sample B Female 131.8
Sample C Male 159.0
Sample D Male 139.4
Midbrain
nTPM: 192.1
Samples: 4

Max nTPM: 289.2
Min nTPM: 123.3
Sample A Female 289.2
Sample B Female 185.2
Sample C Male 170.5
Sample D Male 123.3
Periaqueductal gray
nTPM: 123.4
Samples: 3

Max nTPM: 134.6
Min nTPM: 103.3
Sample B Female 134.6
Sample C Male 132.4
Sample D Male 103.3
Superior colliculi
nTPM: 179.5
Samples: 4

Max nTPM: 237.0
Min nTPM: 135.0
Sample A Female 237.0
Sample B Female 135.0
Sample C Male 192.3
Sample D Male 153.6

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