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  • TISSUE

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  • COPS9
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: Low
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:389.1 nTPM
FANTOM5:70.5 Scaled Tags Per Million
Pig:115.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA044845
Glial cells Low
Neuronal cells Low



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

389.1
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 389.1
Samples: 300

Max nTPM: 1453.0
Min nTPM: 167.0
Std nTPM: 158.8
Median nTPM: 360.6
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1453.0
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1264.0
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1125.8
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 987.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 976.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 901.5
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 854.6
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 852.8
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 774.0
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 703.7
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 684.0
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 647.9
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 642.2
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 624.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 624.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 611.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 608.4
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 594.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 588.7
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 584.4
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 583.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 576.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 575.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 573.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 568.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 566.0
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 557.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 557.7
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 555.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 550.8
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 546.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 543.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 540.3
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 539.7
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 537.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 533.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 527.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 524.9
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 521.2
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 518.1
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 516.0
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 513.9
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 510.3
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 507.6
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 505.2
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 504.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 504.5
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 502.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 499.4
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 499.2
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 497.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 495.9
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 487.9
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 484.4
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 483.2
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 482.5
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 478.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 477.8
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 477.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 475.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 475.3
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 474.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 474.6
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 474.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 470.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 467.5
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 464.4
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 463.8
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 463.6
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 461.2
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 460.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 455.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 454.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 454.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 453.4
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 452.0
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 449.5
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 447.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 447.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 447.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 445.2
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 444.5
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 441.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 441.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 438.5
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 435.5
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 435.0
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 434.1
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 432.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 429.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 429.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 429.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 428.7
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 428.3
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 427.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 424.1
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 422.5
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 421.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 420.5
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 418.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 417.8
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 417.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 416.2
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 415.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 415.1
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 410.9
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 410.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 409.0
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 409.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 407.0
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 406.5
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 403.0
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 402.6
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 402.2
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 399.8
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 398.9
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 394.2
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 393.7
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 393.1
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 389.8
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 388.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 387.4
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 387.3
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 385.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 383.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 382.7
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 382.3
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 382.2
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 381.8
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 380.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 380.0
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 379.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 379.4
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 378.7
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 377.6
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 377.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 377.2
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 377.1
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 375.5
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 373.0
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 371.1
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 370.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 370.0
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 369.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 369.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 366.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 365.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 363.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 362.4
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 361.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 359.9
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 358.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 358.1
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 357.6
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 356.7
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 356.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 355.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 354.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 353.6
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 353.1
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 352.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 352.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 352.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 350.3
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 346.0
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 345.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 344.1
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 343.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 343.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 342.0
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 341.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 340.7
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 339.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 338.9
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 338.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 337.0
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 337.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 336.1
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 335.2
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 334.2
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 333.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 331.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 330.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 330.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 327.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 326.7
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 326.4
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 324.3
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 321.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 321.8
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 321.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 320.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 317.2
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 315.1
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 314.9
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 314.8
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 314.3
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 312.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 310.8
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 310.3
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 307.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 305.4
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 304.8
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 302.4
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 300.9
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 300.7
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 299.4
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 298.7
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 296.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 295.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 294.7
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 294.5
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 294.2
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 294.0
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 292.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 291.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 291.3
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 290.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 289.6
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 288.6
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 288.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 285.7
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 284.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 284.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 284.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 283.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 283.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 282.2
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 280.5
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 279.9
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 279.6
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 279.6
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 277.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 275.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 274.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 273.8
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 273.1
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 273.1
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 273.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 272.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 272.2
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 271.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 271.4
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 271.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 270.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 270.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 270.0
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 269.9
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 269.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 266.7
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 266.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 265.0
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 260.5
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 260.4
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 260.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 260.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 260.1
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 259.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 258.1
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 253.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 253.5
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 253.1
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 252.1
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 250.2
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 249.5
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 248.4
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 248.3
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 247.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 247.2
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 245.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 242.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 242.3
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 240.9
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 238.8
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 237.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 234.3
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 230.0
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 228.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 224.4
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 222.8
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 222.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 221.9
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 220.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 217.5
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 215.5
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 214.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 204.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 203.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 200.8
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 194.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 194.4
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 194.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 192.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 191.1
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 190.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 186.1
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 185.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 183.0
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 180.3
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 167.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

70.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 70.5
FF:10164-103B2 76 years, female 70.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

115.8
Pig sample Sample description nTPM
Caudate
nTPM: 115.8
Samples: 4

Max nTPM: 130.3
Min nTPM: 99.9
Sample A Female 106.7
Sample B Female 130.3
Sample C Male 126.2
Sample D Male 99.9

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