We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
IL17D
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • IL17D
TISSUE SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE
MIDBRAIN OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:84.9 nTPM
HPA Brain:141.0 nTPM
GTEx:84.9 nTPM
FANTOM5:21.2 Scaled Tags Per Million
Pig:7.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

141.0
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 141.0
1981 Female, age 72, midline 162.6
2048 Male, age 55, midline 160.4
2565 Male, age 75, midline 152.5
2816 Male, age 47, midline 124.3
2194 Female, age 79, both hemispheres 105.2
Cervical spinal cord, dorsal horn
nTPM: 107.4
2173 Female, age 72, unknown 143.3
2296 Male, age 66, both hemispheres 132.7
2069 Male, age 47, both hemispheres 107.1
1877 Male, age 55, unknown 103.7
2721 Male, age 90, both hemispheres 85.2
2297 Male, age 75, both hemispheres 72.7
Cervical spinal cord, ventral horn
nTPM: 129.6
2098 Female, age 72, unknown 164.9
2809 Male, age 90, both hemispheres 162.2
2480 Male, age 75, both hemispheres 142.7
2295 Male, age 66, both hemispheres 137.1
2068 Male, age 55, unknown 99.7
2820 Female, age 79, both hemispheres 71.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

84.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 84.9
Samples: 204

Max nTPM: 168.1
Min nTPM: 14.6
Std nTPM: 25.8
Median nTPM: 81.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 168.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 160.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 151.7
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 144.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 139.6
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 139.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 137.1
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 136.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 136.0
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 133.1
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 132.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 132.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 131.4
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 130.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 128.3
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 125.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 125.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 124.9
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 123.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 121.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 120.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 120.3
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 118.6
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 118.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 117.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 116.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 116.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 114.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 114.1
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 112.6
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 111.5
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 111.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 110.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 110.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 108.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 108.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 107.6
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 107.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 107.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 107.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 106.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 105.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 105.3
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 104.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 104.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 104.2
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 103.7
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 103.6
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 103.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 102.6
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 102.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 101.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 100.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 100.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 99.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 96.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 96.1
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 96.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 95.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 95.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 95.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 95.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 94.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 93.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 92.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 92.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 92.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 92.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 92.3
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 92.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 90.9
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 90.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 90.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 90.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 90.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 90.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 90.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 90.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 89.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 89.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 88.7
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 88.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 88.3
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 88.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 86.8
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 86.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 86.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 86.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 85.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 85.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 85.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 85.3
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 84.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 84.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 83.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 83.5
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 83.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 82.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 82.5
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 82.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 81.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 81.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 81.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 80.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 80.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 80.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 79.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 79.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 79.4
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 79.3
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 78.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 78.9
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 78.5
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 78.3
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 77.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 77.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 76.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 76.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 76.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 75.6
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 75.5
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 75.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 74.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 74.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 73.4
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 73.3
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 72.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 72.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 72.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 71.9
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 71.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 71.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 71.5
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 70.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 70.2
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 70.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 70.1
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 70.0
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 69.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 69.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 68.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 68.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 68.4
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 67.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 67.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 66.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 65.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 65.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 65.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 65.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 65.1
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 65.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 64.8
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 64.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 64.8
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 64.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 64.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 63.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 62.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 62.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 62.5
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 62.2
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 61.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 61.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 60.8
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 60.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 60.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 59.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.3
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 59.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 58.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 58.7
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 58.3
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 57.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 57.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 57.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 56.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 56.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 56.2
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 56.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 55.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 55.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 55.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 54.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 54.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 53.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 52.9
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 52.8
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 50.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 50.5
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 50.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 49.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 47.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 47.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 45.4
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 42.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 41.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 41.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 38.2
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 14.6
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

21.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 21.2
FF:10159-103A6 76 years, female 22.4
FF:10181-103D1 60 years, female 19.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

7.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 7.5
Samples: 4

Max nTPM: 11.8
Min nTPM: 4.7
Sample A Female 7.4
Sample B Female 4.7
Sample C Male 11.8
Sample D Male 6.0
Ventral spinal cord
nTPM: 5.0
Samples: 4

Max nTPM: 6.1
Min nTPM: 3.9
Sample A Female 5.4
Sample B Female 3.9
Sample C Male 6.1
Sample D Male 4.7

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo