MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.2 nTPM
HPA Brain:253.3 nTPM
GTEx:92.2 nTPM
FANTOM5:395.0 Scaled Tags Per Million
Pig:1.2 nTPM
Mouse:8.2 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 253.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 172.1
2411 Female, age 72, unknown 240.5
2019 Male, age 18, unknown 215.6
1830 Male, age 51, unknown 212.4
1833 Male, age 53, unknown 192.2
1870 Female, age 42, unknown 187.4
2586 Male, age 75, left hemisphere 163.3
2828 Female, age 72, unknown 161.8
2666 Male, age 74, left hemisphere 125.6
1827 Male, age 72, unknown 115.7
2219 Male, age 76, both hemispheres 106.1
Dorsal raphe nucleus
nTPM: 122.3
2750 Male, age 76, both hemispheres 264.7
2016 Female, age 72, unknown 122.9
1828 Male, age 53, unknown 106.6
2047 Male, age 72, unknown 64.2
2298 Female, age 72, unknown 53.2
Inferior colliculus
nTPM: 87.8
1890 Male, age 53, unknown 104.8
1848 Female, age 42, unknown 90.2
2849 Male, age 72, unknown 82.7
2097 Female, age 72, unknown 73.7
Median raphe nucleus
nTPM: 91.8
2220 Male, age 76, midline 91.8
Periaquaductal grey, anterior
nTPM: 71.5
1947 Male, age 18, unknown 86.9
1795 Male, age 51, unknown 71.5
2502 Female, age 75, unknown 56.1
Periaquaductal grey, dorsal
nTPM: 60.5
2464 Female, age 72, unknown 110.5
1831 Male, age 72, unknown 77.2
1840 Male, age 53, unknown 30.0
2850 Male, age 76, both hemispheres 24.3
Periaquaductal grey, lateral
nTPM: 68.2
2272 Male, age 74, both hemispheres 92.8
2053 Male, age 18, unknown 79.8
2140 Male, age 76, both hemispheres 31.9
Pretectal area
nTPM: 93.0
2316 Male, age 76, right hemisphere 151.7
1815 Male, age 53, unknown 134.3
2407 Male, age 75, both hemispheres 133.8
2007 Male, age 72, unknown 113.2
1817 Female, age 42, unknown 92.4
2825 Male, age 18, unknown 88.8
2273 Male, age 74, both hemispheres 81.7
2224 Female, age 72, unknown 70.5
1944 Female, age 72, unknown 56.0
2667 Female, age 75, unknown 53.4
1816 Male, age 51, unknown 47.5
Red nucleus
nTPM: 253.3
2823 Male, age 76, right hemisphere 337.5
1904 Male, age 53, unknown 281.5
2769 Male, age 72, unknown 274.8
2227 Male, age 72, unknown 270.9
1865 Male, age 51, unknown 259.9
2588 Male, age 74, left hemisphere 254.7
1821 Female, age 72, unknown 251.7
2785 Male, age 18, unknown 241.5
2725 Female, age 75, unknown 240.9
2503 Female, age 72, unknown 240.6
2584 Male, age 75, left hemisphere 197.2
1954 Female, age 42, unknown 188.0
Substantia nigra
nTPM: 119.2
2583 Male, age 75, right hemisphere 194.1
2590 Female, age 75, unknown 182.3
1851 Male, age 51, unknown 149.0
1889 Female, age 72, unknown 133.6
2409 Female, age 72, unknown 108.8
2699 Male, age 18, unknown 105.0
1941 Male, age 53, unknown 99.5
1916 Female, age 42, unknown 79.5
2665 Male, age 74, both hemispheres 72.7
2241 Male, age 72, unknown 67.2
Superior colliculus
nTPM: 133.1
1913 Female, age 42, unknown 219.4
1995 Male, age 72, unknown 209.5
2668 Female, age 75, unknown 158.9
1895 Male, age 76, right hemisphere 153.2
2587 Male, age 74, left hemisphere 137.9
1839 Male, age 51, unknown 134.8
1796 Male, age 53, unknown 102.5
2664 Male, age 75, both hemispheres 83.0
2087 Female, age 72, unknown 67.2
2261 Male, age 18, unknown 64.4
Ventral tegmental area
nTPM: 146.3
2223 Female, age 72, unknown 230.5
2410 Female, age 72, unknown 166.8
1942 Male, age 51, unknown 130.3
2021 Male, age 53, unknown 126.4
2218 Male, age 76, both hemispheres 124.6
1915 Female, age 42, unknown 99.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.2
Samples: 183

Max nTPM: 645.1
Min nTPM: 1.2
Std nTPM: 88.2
Median nTPM: 67.8
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 645.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 625.7
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 448.2
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 341.1
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 323.1
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 278.5
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 267.4
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 264.6
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 226.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 221.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 211.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 395.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 395.0
FF:10158-103A5 76 years, female 395.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 1.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 1.2
Samples: 4

Max nTPM: 2.8
Min nTPM: 0.6
Sample A Female 0.9
Sample B Female 2.8
Sample C Male 0.6
Sample D Male 0.6
Midbrain
nTPM: 0.6
Samples: 4

Max nTPM: 1.0
Min nTPM: 0.3
Sample A Female 1.0
Sample B Female 0.5
Sample C Male 0.3
Sample D Male 0.6
Periaqueductal gray
nTPM: 0.6
Samples: 3

Max nTPM: 0.6
Min nTPM: 0.6
Sample B Female 0.6
Sample C Male 0.6
Sample D Male 0.6
Superior colliculi
nTPM: 0.8
Samples: 4

Max nTPM: 1.2
Min nTPM: 0.3
Sample A Female 1.0
Sample B Female 1.2
Sample C Male 0.3
Sample D Male 0.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.2
Samples: 4

Max nTPM: 10.3
Min nTPM: 7.3
Sample A Male 10.3
Sample B Male 7.3
Sample C Female 7.3
Sample D Female 7.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68157418 Antisense, RP_041116_02_F11, Mouse strain C57BL/6J (56 days, male) 0.2

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