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TRMT112
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  • TRMT112
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:108.5 nTPM
HPA Brain:63.8 nTPM
GTEx:108.5 nTPM
FANTOM5:71.7 Scaled Tags Per Million
Pig:117.4 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

63.8
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 62.5
1981 Female, age 72, midline 79.0
2565 Male, age 75, midline 69.4
2194 Female, age 79, both hemispheres 58.9
2816 Male, age 47, midline 53.0
2048 Male, age 55, midline 52.0
Cervical spinal cord, dorsal horn
nTPM: 63.5
2173 Female, age 72, unknown 83.0
2069 Male, age 47, both hemispheres 70.5
2296 Male, age 66, both hemispheres 70.5
2297 Male, age 75, both hemispheres 54.1
1877 Male, age 55, unknown 53.9
2721 Male, age 90, both hemispheres 49.2
Cervical spinal cord, ventral horn
nTPM: 63.8
2809 Male, age 90, both hemispheres 78.8
2098 Female, age 72, unknown 73.3
2480 Male, age 75, both hemispheres 62.7
2820 Female, age 79, both hemispheres 59.5
2068 Male, age 55, unknown 57.0
2295 Male, age 66, both hemispheres 51.6

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

108.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 108.5
Samples: 204

Max nTPM: 196.5
Min nTPM: 61.1
Std nTPM: 23.8
Median nTPM: 104.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 196.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 185.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 180.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 169.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 169.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 164.8
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 163.1
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 162.9
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 162.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 161.0
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 159.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 153.0
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 151.2
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 146.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 145.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 145.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 145.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 144.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 143.1
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 140.6
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 138.4
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 138.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 136.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 136.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 134.5
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 134.4
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 134.4
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 133.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 132.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 132.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 131.8
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 131.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 131.2
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 129.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 129.5
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 127.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 127.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 127.1
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 126.7
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 126.7
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 126.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 125.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 125.7
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 125.6
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 124.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 123.9
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 123.5
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 122.5
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 122.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 119.4
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 118.8
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 118.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 118.0
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 117.3
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 117.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 116.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 116.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 116.6
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 116.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 116.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 115.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 115.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 115.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 115.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 114.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 114.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 114.5
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 114.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 114.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 114.0
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 113.7
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 113.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 113.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 112.9
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 112.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 112.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 112.4
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 111.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 111.5
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 111.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 111.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 111.0
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 110.9
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 110.7
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 110.3
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 110.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 109.9
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 109.8
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 109.5
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 108.8
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 108.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 108.3
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 108.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 108.2
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 107.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 106.8
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 106.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 106.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 105.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 105.6
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 105.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 105.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 104.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 104.1
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 104.0
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 103.7
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 103.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 103.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 102.6
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 102.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 102.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 102.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 102.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 101.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 101.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 101.0
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 101.0
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 100.9
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 100.9
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 100.6
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 100.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 100.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 99.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 99.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 99.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 99.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 99.5
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 99.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 98.3
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 98.2
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 98.1
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 97.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 97.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 97.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 97.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 97.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 96.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 96.6
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 96.4
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 96.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 96.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 95.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 95.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 94.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 94.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 94.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 94.2
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 94.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 94.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 93.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 93.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 93.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 92.9
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 92.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 92.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 92.5
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 92.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 91.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 91.6
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 91.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 90.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 89.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 89.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 89.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 89.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 89.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 88.8
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 88.5
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 87.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 87.9
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 87.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 87.0
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 86.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 86.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 85.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 85.4
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 85.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 83.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 83.7
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 83.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 82.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.4
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 82.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 80.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 80.8
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 80.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 78.8
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 78.7
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 78.3
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 78.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 76.7
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 75.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 75.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 74.4
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 73.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 72.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 69.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 66.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 66.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 65.9
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 65.8
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 64.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 61.1
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

71.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 71.7
FF:10181-103D1 60 years, female 78.9
FF:10159-103A6 76 years, female 64.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

117.4
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 117.4
Samples: 4

Max nTPM: 158.9
Min nTPM: 85.5
Sample A Female 101.5
Sample B Female 123.8
Sample C Male 158.9
Sample D Male 85.5
Ventral spinal cord
nTPM: 107.8
Samples: 4

Max nTPM: 128.1
Min nTPM: 91.6
Sample A Female 94.4
Sample B Female 128.1
Sample C Male 117.1
Sample D Male 91.6

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