MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:99.6 nTPM
HPA Brain:66.5 nTPM
GTEx:99.6 nTPM
FANTOM5:17.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 66.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 53.2
2586 Male, age 75, left hemisphere 75.2
2666 Male, age 74, left hemisphere 60.0
1827 Male, age 72, unknown 59.7
2219 Male, age 76, both hemispheres 57.8
2828 Female, age 72, unknown 53.8
2411 Female, age 72, unknown 52.0
1870 Female, age 42, unknown 51.7
1833 Male, age 53, unknown 47.6
1830 Male, age 51, unknown 42.2
2019 Male, age 18, unknown 32.2
Dorsal raphe nucleus
nTPM: 56.3
2298 Female, age 72, unknown 62.8
2047 Male, age 72, unknown 60.9
2750 Male, age 76, both hemispheres 59.6
1828 Male, age 53, unknown 51.0
2016 Female, age 72, unknown 47.3
Inferior colliculus
nTPM: 53.4
2097 Female, age 72, unknown 55.4
2849 Male, age 72, unknown 53.4
1890 Male, age 53, unknown 53.3
1848 Female, age 42, unknown 51.6
Median raphe nucleus
nTPM: 60.3
2220 Male, age 76, midline 60.3
Periaquaductal grey, anterior
nTPM: 66.5
2502 Female, age 75, unknown 70.6
1947 Male, age 18, unknown 65.4
1795 Male, age 51, unknown 63.4
Periaquaductal grey, dorsal
nTPM: 46.1
1840 Male, age 53, unknown 58.5
2850 Male, age 76, both hemispheres 44.0
2464 Female, age 72, unknown 41.2
1831 Male, age 72, unknown 40.9
Periaquaductal grey, lateral
nTPM: 40.1
2053 Male, age 18, unknown 49.5
2140 Male, age 76, both hemispheres 40.7
2272 Male, age 74, both hemispheres 30.3
Pretectal area
nTPM: 47.9
1816 Male, age 51, unknown 62.1
1944 Female, age 72, unknown 59.3
2825 Male, age 18, unknown 56.1
2224 Female, age 72, unknown 55.7
2007 Male, age 72, unknown 53.3
2667 Female, age 75, unknown 48.0
2316 Male, age 76, right hemisphere 44.6
1817 Female, age 42, unknown 44.5
1815 Male, age 53, unknown 42.8
2273 Male, age 74, both hemispheres 35.1
2407 Male, age 75, both hemispheres 25.1
Red nucleus
nTPM: 47.8
2503 Female, age 72, unknown 60.3
2588 Male, age 74, left hemisphere 57.5
2725 Female, age 75, unknown 56.6
2769 Male, age 72, unknown 56.6
2227 Male, age 72, unknown 50.1
1821 Female, age 72, unknown 48.1
1954 Female, age 42, unknown 44.7
2584 Male, age 75, left hemisphere 44.3
1904 Male, age 53, unknown 41.6
1865 Male, age 51, unknown 40.4
2785 Male, age 18, unknown 37.1
2823 Male, age 76, right hemisphere 36.1
Substantia nigra
nTPM: 56.4
1916 Female, age 42, unknown 80.8
2665 Male, age 74, both hemispheres 70.4
1851 Male, age 51, unknown 61.2
1941 Male, age 53, unknown 60.5
2699 Male, age 18, unknown 58.2
1889 Female, age 72, unknown 57.1
2583 Male, age 75, right hemisphere 54.0
2241 Male, age 72, unknown 45.7
2590 Female, age 75, unknown 40.7
2409 Female, age 72, unknown 35.2
Superior colliculus
nTPM: 49.6
1796 Male, age 53, unknown 65.3
2261 Male, age 18, unknown 63.3
2668 Female, age 75, unknown 50.1
2087 Female, age 72, unknown 49.5
2587 Male, age 74, left hemisphere 49.5
1839 Male, age 51, unknown 47.1
2664 Male, age 75, both hemispheres 47.0
1913 Female, age 42, unknown 45.5
1895 Male, age 76, right hemisphere 43.2
1995 Male, age 72, unknown 35.8
Ventral tegmental area
nTPM: 55.8
1915 Female, age 42, unknown 66.4
1942 Male, age 51, unknown 58.1
2223 Female, age 72, unknown 57.9
2218 Male, age 76, both hemispheres 54.8
2410 Female, age 72, unknown 53.8
2021 Male, age 53, unknown 43.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 99.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 99.6
Samples: 183

Max nTPM: 229.6
Min nTPM: 36.6
Std nTPM: 36.0
Median nTPM: 96.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 229.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 214.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 188.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 185.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 181.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 177.4
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 174.7
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 167.5
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 167.1
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 163.9
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 158.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 17.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 17.0
FF:10158-103A5 76 years, female 17.0

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