MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:11.7 nTPM
HPA Brain:59.2 nTPM
GTEx:11.7 nTPM
FANTOM5:110.9 Scaled Tags Per Million
Pig:49.9 nTPM
Mouse:31.4 nTPM
Allen mouse:1.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 59.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 52.4
1833 Male, age 53, unknown 57.5
2411 Female, age 72, unknown 56.6
1870 Female, age 42, unknown 56.2
1830 Male, age 51, unknown 54.2
2586 Male, age 75, left hemisphere 52.9
2219 Male, age 76, both hemispheres 51.6
2019 Male, age 18, unknown 50.7
2828 Female, age 72, unknown 49.7
1827 Male, age 72, unknown 48.6
2666 Male, age 74, left hemisphere 46.0
Dorsal raphe nucleus
nTPM: 48.8
2750 Male, age 76, both hemispheres 59.2
2047 Male, age 72, unknown 50.9
1828 Male, age 53, unknown 48.5
2298 Female, age 72, unknown 43.6
2016 Female, age 72, unknown 41.7
Inferior colliculus
nTPM: 47.6
1848 Female, age 42, unknown 52.6
2849 Male, age 72, unknown 51.7
2097 Female, age 72, unknown 43.4
1890 Male, age 53, unknown 42.7
Median raphe nucleus
nTPM: 57.1
2220 Male, age 76, midline 57.1
Periaquaductal grey, anterior
nTPM: 59.2
1947 Male, age 18, unknown 73.8
2502 Female, age 75, unknown 54.8
1795 Male, age 51, unknown 48.9
Periaquaductal grey, dorsal
nTPM: 48.6
1840 Male, age 53, unknown 52.7
2850 Male, age 76, both hemispheres 47.7
2464 Female, age 72, unknown 47.3
1831 Male, age 72, unknown 46.6
Periaquaductal grey, lateral
nTPM: 48.0
2053 Male, age 18, unknown 49.4
2272 Male, age 74, both hemispheres 47.5
2140 Male, age 76, both hemispheres 47.2
Pretectal area
nTPM: 52.0
1816 Male, age 51, unknown 62.7
2667 Female, age 75, unknown 57.7
2007 Male, age 72, unknown 54.8
1817 Female, age 42, unknown 54.2
1944 Female, age 72, unknown 53.7
1815 Male, age 53, unknown 53.4
2825 Male, age 18, unknown 50.7
2407 Male, age 75, both hemispheres 48.7
2273 Male, age 74, both hemispheres 47.3
2224 Female, age 72, unknown 45.2
2316 Male, age 76, right hemisphere 43.4
Red nucleus
nTPM: 56.6
2588 Male, age 74, left hemisphere 61.1
2503 Female, age 72, unknown 60.5
2823 Male, age 76, right hemisphere 60.5
1954 Female, age 42, unknown 60.4
1865 Male, age 51, unknown 59.2
1904 Male, age 53, unknown 58.3
2769 Male, age 72, unknown 56.6
1821 Female, age 72, unknown 55.8
2227 Male, age 72, unknown 53.6
2584 Male, age 75, left hemisphere 53.1
2785 Male, age 18, unknown 50.4
2725 Female, age 75, unknown 49.9
Substantia nigra
nTPM: 50.1
2590 Female, age 75, unknown 56.6
2583 Male, age 75, right hemisphere 55.8
1889 Female, age 72, unknown 55.2
1941 Male, age 53, unknown 53.8
2241 Male, age 72, unknown 53.6
2409 Female, age 72, unknown 52.7
1851 Male, age 51, unknown 46.7
1916 Female, age 42, unknown 46.1
2665 Male, age 74, both hemispheres 42.8
2699 Male, age 18, unknown 37.8
Superior colliculus
nTPM: 52.9
2261 Male, age 18, unknown 62.5
2087 Female, age 72, unknown 58.9
1895 Male, age 76, right hemisphere 57.6
1913 Female, age 42, unknown 53.5
2587 Male, age 74, left hemisphere 52.8
1839 Male, age 51, unknown 52.0
2668 Female, age 75, unknown 49.8
2664 Male, age 75, both hemispheres 48.5
1995 Male, age 72, unknown 47.3
1796 Male, age 53, unknown 45.7
Ventral tegmental area
nTPM: 48.1
2410 Female, age 72, unknown 51.8
2223 Female, age 72, unknown 51.3
2218 Male, age 76, both hemispheres 49.6
1942 Male, age 51, unknown 46.7
1915 Female, age 42, unknown 44.6
2021 Male, age 53, unknown 44.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 11.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.7
Samples: 183

Max nTPM: 23.7
Min nTPM: 7.1
Std nTPM: 2.6
Median nTPM: 11.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 23.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 21.8
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 20.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 18.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 18.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 18.0
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 17.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 16.9
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 16.8
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 16.4
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 16.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 110.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.9
FF:10158-103A5 76 years, female 110.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 49.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.0
Samples: 4

Max nTPM: 48.1
Min nTPM: 37.2
Sample A Female 48.1
Sample B Female 37.2
Sample C Male 46.4
Sample D Male 48.1
Midbrain
nTPM: 50.0
Samples: 4

Max nTPM: 59.6
Min nTPM: 41.0
Sample A Female 59.6
Sample B Female 43.7
Sample C Male 55.5
Sample D Male 41.0
Periaqueductal gray
nTPM: 41.0
Samples: 3

Max nTPM: 42.9
Min nTPM: 38.2
Sample B Female 42.9
Sample C Male 41.9
Sample D Male 38.2
Superior colliculi
nTPM: 44.8
Samples: 4

Max nTPM: 53.4
Min nTPM: 36.2
Sample A Female 40.9
Sample B Female 36.2
Sample C Male 53.4
Sample D Male 48.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.4
Samples: 4

Max nTPM: 33.8
Min nTPM: 26.5
Sample A Male 26.5
Sample B Male 32.4
Sample C Female 33.8
Sample D Female 32.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.0
69608513 Antisense, RP_050426_04_C05, Mouse strain C57BL/6J (56 days, male) 1.2
72472775 Antisense, RP_051101_02_D07, Mouse strain C57BL/6J (56 days, male) 1.2
68918988 Antisense, RP_050301_02_C11, Mouse strain C57BL/6J (56 days, male) 0.5

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