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TISSUE PRIMARY DATA SPINAL CORD Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Tissue methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:214.6 nTPM
HPA Brain:110.2 nTPM
GTEx:214.6 nTPM
FANTOM5:284.0 Scaled Tags Per Million
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 91.7
1981 Female, age 72, midline 113.1
2194 Female, age 79, both hemispheres 99.9
2048 Male, age 55, midline 92.4
2565 Male, age 75, midline 85.1
2816 Male, age 47, midline 68.1
Cervical spinal cord, dorsal horn
nTPM: 95.6
2173 Female, age 72, unknown 139.4
2069 Male, age 47, both hemispheres 100.9
1877 Male, age 55, unknown 89.1
2296 Male, age 66, both hemispheres 88.1
2297 Male, age 75, both hemispheres 86.3
2721 Male, age 90, both hemispheres 69.7
Cervical spinal cord, ventral horn
nTPM: 110.2
2480 Male, age 75, both hemispheres 147.7
2068 Male, age 55, unknown 119.8
2809 Male, age 90, both hemispheres 106.6
2820 Female, age 79, both hemispheres 105.7
2295 Male, age 66, both hemispheres 93.2
2098 Female, age 72, unknown 88.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

214.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 214.6
Samples: 204

Max nTPM: 482.9
Min nTPM: 116.9
Std nTPM: 60.1
Median nTPM: 208.7
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 482.9
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 415.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 399.0
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 378.0
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 367.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 346.6
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 341.0
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 334.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 332.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 330.6
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 328.1
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 320.1
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 317.6
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 316.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 314.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 310.2
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 309.2
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 298.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 294.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 292.4
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 289.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 288.8
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 284.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 283.2
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 282.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 282.0
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 281.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 276.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 276.1
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 276.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 276.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 275.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 274.6
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 271.4
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 271.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 270.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 269.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 269.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 268.4
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 267.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 267.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 262.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 260.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 254.9
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 254.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 253.6
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 252.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 249.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 249.6
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 248.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 245.9
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 245.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 243.8
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 243.4
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 242.4
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 241.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 238.4
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 238.2
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 237.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 236.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 235.2
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 234.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 231.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 231.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 230.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 230.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 229.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 229.1
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 228.8
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 228.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 227.7
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 226.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 226.2
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 224.7
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 224.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 223.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 223.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 221.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 220.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 219.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 219.1
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 218.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 217.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 216.5
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 216.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 216.0
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 215.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 215.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 214.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 214.2
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 213.8
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 213.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 213.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 213.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 212.5
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 211.4
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 211.0
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 210.6
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 210.0
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 209.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 209.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 209.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 208.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 207.2
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 203.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 203.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 203.0
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 201.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 201.0
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 200.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 199.0
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 198.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 196.4
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 195.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 194.6
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 194.3
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 194.2
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 193.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 193.5
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 193.3
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 192.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 191.4
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 190.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 190.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 190.0
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 189.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 189.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 188.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 187.5
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 187.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 184.8
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 184.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 184.1
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 183.0
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 182.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 182.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 181.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 181.3
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 179.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 179.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 179.4
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 179.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 178.9
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 178.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 177.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 177.1
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 174.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 174.0
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 173.6
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 173.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 170.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 169.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 169.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 168.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 168.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 167.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 166.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 166.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 166.5
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 165.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 163.2
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 163.0
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 162.8
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 162.6
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 162.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 161.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 161.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 161.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 160.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 159.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 159.2
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 158.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 157.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 157.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 157.3
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 156.5
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 155.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 155.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 155.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 152.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 151.5
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 151.5
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 150.1
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 148.0
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 147.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 147.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 147.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 146.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 144.0
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 143.0
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 142.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 137.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 133.5
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 133.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 132.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 128.4
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 128.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 127.8
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 127.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 125.4
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 123.9
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 121.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 117.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 116.9
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

284.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 284.0
FF:10181-103D1 60 years, female 402.9
FF:10159-103A6 76 years, female 165.0

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