MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:20.7 nTPM
HPA Brain:32.5 nTPM
GTEx:20.7 nTPM
FANTOM5:32.3 Scaled Tags Per Million
Pig:34.1 nTPM
Mouse:16.3 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 32.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 22.6
2586 Male, age 75, left hemisphere 32.8
1870 Female, age 42, unknown 29.7
2411 Female, age 72, unknown 23.8
2828 Female, age 72, unknown 23.8
2666 Male, age 74, left hemisphere 23.5
1827 Male, age 72, unknown 23.2
1833 Male, age 53, unknown 21.7
2219 Male, age 76, both hemispheres 18.6
1830 Male, age 51, unknown 18.4
2019 Male, age 18, unknown 10.8
Dorsal raphe nucleus
nTPM: 30.0
2298 Female, age 72, unknown 33.9
2047 Male, age 72, unknown 33.5
1828 Male, age 53, unknown 29.7
2016 Female, age 72, unknown 27.6
2750 Male, age 76, both hemispheres 25.5
Inferior colliculus
nTPM: 24.4
2849 Male, age 72, unknown 27.8
2097 Female, age 72, unknown 26.2
1848 Female, age 42, unknown 24.1
1890 Male, age 53, unknown 19.6
Median raphe nucleus
nTPM: 32.5
2220 Male, age 76, midline 32.5
Periaquaductal grey, anterior
nTPM: 26.3
1947 Male, age 18, unknown 29.1
2502 Female, age 75, unknown 25.8
1795 Male, age 51, unknown 24.0
Periaquaductal grey, dorsal
nTPM: 29.4
1840 Male, age 53, unknown 39.2
2850 Male, age 76, both hemispheres 29.9
2464 Female, age 72, unknown 24.8
1831 Male, age 72, unknown 23.9
Periaquaductal grey, lateral
nTPM: 22.7
2053 Male, age 18, unknown 28.1
2140 Male, age 76, both hemispheres 25.3
2272 Male, age 74, both hemispheres 14.7
Pretectal area
nTPM: 19.3
2825 Male, age 18, unknown 33.4
2224 Female, age 72, unknown 29.6
2667 Female, age 75, unknown 19.5
2316 Male, age 76, right hemisphere 18.9
1817 Female, age 42, unknown 17.8
1816 Male, age 51, unknown 16.9
2407 Male, age 75, both hemispheres 16.6
2273 Male, age 74, both hemispheres 16.0
1815 Male, age 53, unknown 15.6
1944 Female, age 72, unknown 14.2
2007 Male, age 72, unknown 13.5
Red nucleus
nTPM: 17.4
2584 Male, age 75, left hemisphere 21.6
1821 Female, age 72, unknown 20.8
2725 Female, age 75, unknown 19.6
1954 Female, age 42, unknown 18.9
2588 Male, age 74, left hemisphere 18.7
2503 Female, age 72, unknown 18.6
2769 Male, age 72, unknown 18.4
2227 Male, age 72, unknown 17.7
1904 Male, age 53, unknown 16.1
1865 Male, age 51, unknown 14.7
2823 Male, age 76, right hemisphere 12.9
2785 Male, age 18, unknown 10.9
Substantia nigra
nTPM: 23.0
2241 Male, age 72, unknown 30.2
1916 Female, age 42, unknown 29.3
2699 Male, age 18, unknown 26.6
2665 Male, age 74, both hemispheres 26.5
1851 Male, age 51, unknown 24.6
1941 Male, age 53, unknown 20.2
1889 Female, age 72, unknown 19.3
2409 Female, age 72, unknown 18.4
2590 Female, age 75, unknown 18.1
2583 Male, age 75, right hemisphere 17.2
Superior colliculus
nTPM: 19.0
1839 Male, age 51, unknown 24.1
2664 Male, age 75, both hemispheres 23.2
1796 Male, age 53, unknown 22.2
2587 Male, age 74, left hemisphere 20.9
1895 Male, age 76, right hemisphere 20.0
2668 Female, age 75, unknown 19.6
2261 Male, age 18, unknown 19.1
1995 Male, age 72, unknown 15.0
1913 Female, age 42, unknown 13.4
2087 Female, age 72, unknown 12.5
Ventral tegmental area
nTPM: 26.1
1942 Male, age 51, unknown 30.2
1915 Female, age 42, unknown 28.0
2021 Male, age 53, unknown 28.0
2218 Male, age 76, both hemispheres 25.0
2410 Female, age 72, unknown 24.4
2223 Female, age 72, unknown 21.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 20.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 20.7
Samples: 183

Max nTPM: 29.4
Min nTPM: 14.6
Std nTPM: 2.2
Median nTPM: 20.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 29.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 28.3
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 26.8
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 26.0
GTEX-1192X-0011-R2b-SM-GI4VV 50-59 years, male 25.5
GTEX-ZYY3-0011-R2a-SM-GNTB2 60-69 years, female 24.8
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 24.6
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 24.5
GTEX-11TTK-0011-R2b-SM-GJ3PU 60-69 years, female 24.4
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 24.1
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 24.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 32.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 32.3
FF:10158-103A5 76 years, female 32.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 34.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.6
Samples: 4

Max nTPM: 35.2
Min nTPM: 27.1
Sample A Female 35.2
Sample B Female 33.4
Sample C Male 34.8
Sample D Male 27.1
Midbrain
nTPM: 31.8
Samples: 4

Max nTPM: 36.3
Min nTPM: 23.5
Sample A Female 36.3
Sample B Female 32.2
Sample C Male 23.5
Sample D Male 35.1
Periaqueductal gray
nTPM: 34.1
Samples: 3

Max nTPM: 39.3
Min nTPM: 31.1
Sample B Female 31.1
Sample C Male 39.3
Sample D Male 31.9
Superior colliculi
nTPM: 29.1
Samples: 4

Max nTPM: 33.7
Min nTPM: 21.3
Sample A Female 33.7
Sample B Female 32.3
Sample C Male 21.3
Sample D Male 29.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.3
Samples: 4

Max nTPM: 17.1
Min nTPM: 15.3
Sample A Male 16.8
Sample B Male 16.0
Sample C Female 15.3
Sample D Female 17.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
71016584 Antisense, RP_050725_03_A03, Mouse strain C57BL/6J (56 days, male) 0.5
68632679 Antisense, RP_050125_02_A06, Mouse strain C57BL/6J (56 days, male) 0.3

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