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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
723.6
Sample id
Sample description
nTPM
Amygdala nTPM: 675.3
2814
Male, age 76, right hemisphere
863.9
2514
Male, age 75, right hemisphere
764.8
2695
Female, age 67, right hemisphere
660.3
2517
Female, age 94, left hemisphere
595.5
1987
Female, age 91, left hemisphere
492.0
Basal amygdala nTPM: 521.0
2827
Female, age 67, right hemisphere
687.3
2110
Male, age 80, left hemisphere
594.4
2685
Female, age 94, left hemisphere
538.2
2609
Male, age 75, right hemisphere
516.7
1955
Male, age 76, both hemispheres
513.7
2243
Female, age 91, right hemisphere
275.6
Central amygdala nTPM: 582.4
1905
Male, age 76, both hemispheres
745.3
2826
Female, age 94, left hemisphere
605.5
2515
Male, age 75, right hemisphere
536.7
2239
Male, age 80, left hemisphere
535.3
2701
Female, age 91, right hemisphere
489.0
Corticomedial amygdala nTPM: 389.2
2428
Male, age 75, right hemisphere
566.9
2429
Female, age 94, left hemisphere
483.7
2535
Female, age 67, right hemisphere
400.5
2240
Male, age 76, both hemispheres
366.3
2829
Male, age 80, left hemisphere
325.7
2242
Female, age 91, right hemisphere
192.0
Lateral amygdala nTPM: 723.6
2830
Female, age 67, right hemisphere
960.1
2516
Male, age 75, right hemisphere
790.3
1883
Male, age 76, both hemispheres
761.5
2256
Male, age 80, left hemisphere
687.1
2534
Female, age 94, left hemisphere
632.5
2255
Female, age 91, right hemisphere
509.8
AMYGDALA - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
319.2
GTEx sample id
Sample description
nTPM
Brain - Amygdala Average nTPM: 319.2
Samples: 181
Max nTPM: 1146.7
Min nTPM: 97.9
Std nTPM: 157.8
Median nTPM: 276.4
GTEX-14E7W-0011-R4b-SM-62LEA
70-79 years, male
1146.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD
50-59 years, male
882.6
GTEX-14PJM-0011-R4a-SM-5YYAS
50-59 years, female
841.6
GTEX-1QP6S-0011-R4b-SM-F33ZY
40-49 years, male
793.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM
60-69 years, male
733.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ
60-69 years, male
703.5
GTEX-131XH-0011-R4b-SM-5DUWB
50-59 years, male
679.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ
50-59 years, male
628.0
GTEX-1H23P-0011-R4b-SM-CL54R
60-69 years, male
610.5
GTEX-12WSA-0011-R4a-SM-57WB7
60-69 years, male
609.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ
60-69 years, male
601.0
GTEX-ZAB4-0011-R4a-SM-4SOKB
40-49 years, male
575.3
GTEX-11ZTS-0011-R4b-SM-GINAQ
60-69 years, female
571.5
GTEX-1CB4G-0011-R4b-SM-CJI28
60-69 years, male
550.3
GTEX-144GL-0011-R4a-SM-5PNUI
50-59 years, male
536.9
GTEX-1HBPH-0011-R4a-SM-A96RX
40-49 years, female
535.2
GTEX-ZYY3-0011-R4a-SM-GQ1CY
60-69 years, female
528.3
GTEX-PVOW-0011-R4A-SM-H6Q8O
40-49 years, male
525.3
GTEX-1B996-0011-R4b-SM-9OSVO
60-69 years, male
521.6
GTEX-1H1CY-0011-R4b-SM-CJI3G
60-69 years, female
511.3
GTEX-12WSF-0011-R4b-SM-5HL88
70-79 years, male
508.4
GTEX-ZAK1-0011-R4a-SM-6AJBK
50-59 years, female
501.5
GTEX-147F4-0011-R4b-SM-GJ3R4
50-59 years, male
482.9
GTEX-147GR-0011-R4a-SM-5S2V2
60-69 years, male
476.9
GTEX-11ONC-0011-R4b-SM-DO93H
60-69 years, male
465.5
GTEX-XLM4-0011-R4B-SM-4AT5C
60-69 years, male
458.8
GTEX-1EX96-0011-R4a-SM-ARU82
50-59 years, male
457.5
GTEX-ZZPT-0011-R4a-SM-GPRX4
50-59 years, male
446.4
GTEX-1JN1M-0011-R4b-SM-F6494
60-69 years, female
446.2
GTEX-13JVG-0011-R4a-SM-5MR4C
60-69 years, male
442.3
GTEX-145LU-0011-R4b-SM-5P9K1
50-59 years, male
439.9
GTEX-13OW6-0011-R4a-SM-5O9DX
50-59 years, male
432.6
GTEX-1HCU6-0011-R4b-SM-ARU74
60-69 years, female
421.8
GTEX-N7MT-0011-R4a-SM-2I3G9
60-69 years, female
417.0
GTEX-1PPGY-0011-R4a-SM-F3K4F
60-69 years, male
412.7
GTEX-1445S-0011-R4a-SM-5PNWN
60-69 years, male
408.4
GTEX-1E1VI-0011-R4b-SM-9QEHV
50-59 years, male
407.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9
50-59 years, male
407.2
GTEX-14C5O-0011-R4b-SM-G9ERF
60-69 years, male
405.4
GTEX-1F48J-0011-R4b-SM-9OSVX
50-59 years, female
404.2
GTEX-X585-0011-R4B-SM-46MVH
50-59 years, male
403.8
GTEX-1B8L1-0011-R4a-SM-7EWFJ
60-69 years, male
402.1
GTEX-13X6I-0011-R4b-SM-5PNU9
60-69 years, male
401.8
GTEX-QVUS-0011-R4A-SM-3GAE7
60-69 years, female
401.6
GTEX-1I1GR-0011-R4a-SM-CMKHC
60-69 years, male
399.3
GTEX-X4XX-0011-R4B-SM-46MWL
60-69 years, male
398.1
GTEX-13OW8-0011-R4a-SM-9WG6V
60-69 years, male
390.6
GTEX-15CHQ-0011-R4a-SM-686ZX
60-69 years, male
386.3
GTEX-117XS-0011-R4b-SM-GJ3PR
60-69 years, male
384.2
GTEX-12WSH-0011-R4a-SM-5GU6K
50-59 years, male
382.4
GTEX-1C6WA-0011-R4a-SM-9QEH2
60-69 years, male
379.6
GTEX-11ZVC-0011-R4a-SM-5BC6Z
50-59 years, female
375.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ
70-79 years, male
370.2
GTEX-1HBPI-0011-R4a-SM-CJI3K
50-59 years, male
368.5
GTEX-13OVH-0011-R4a-SM-5KM3W
70-79 years, male
367.2
GTEX-WHSE-0011-R4A-SM-3P5ZN
20-29 years, male
367.1
GTEX-1PWST-0011-R4a-SM-F2T9X
70-79 years, male
366.1
GTEX-13PVQ-0011-R4a-SM-5O9CT
50-59 years, male
365.1
GTEX-1RQEC-0011-R4b-SM-F342C
60-69 years, male
362.5
GTEX-12WSD-0011-R4b-SM-5LZUA
60-69 years, female
361.9
GTEX-1POEN-0011-R4b-SM-F3K4O
30-39 years, female
358.0
GTEX-1GF9W-0011-R4a-SM-CE6RH
60-69 years, male
354.8
GTEX-12ZZZ-0011-R4b-SM-5DUV7
60-69 years, male
344.9
GTEX-14DAQ-0011-R4a-SM-5YYAI
60-69 years, female
341.7
GTEX-12ZZY-0011-R4a-SM-GIN9F
60-69 years, male
340.8
GTEX-13QJC-0011-R4a-SM-H65ZP
60-69 years, female
331.5
GTEX-1R46S-0011-R4b-SM-F2TBF
60-69 years, female
330.2
GTEX-13FLV-0011-R4a-SM-5LZYU
50-59 years, male
328.5
GTEX-13OVL-0011-R4b-SM-5L3HV
50-59 years, male
328.2
GTEX-13112-0011-R4b-SM-5DUXL
50-59 years, male
327.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA
60-69 years, male
324.4
GTEX-1LH75-0011-R4a-SM-F2TAM
50-59 years, female
317.0
GTEX-1LKK1-0011-R4b-SM-EY5YA
50-59 years, female
316.0
GTEX-RNOR-0011-R4A-SM-3GAD3
50-59 years, female
312.9
GTEX-1HFI6-0011-R4b-SM-A96RT
40-49 years, male
310.9
GTEX-1AX9I-0011-R4b-SM-7EPIB
60-69 years, male
304.9
GTEX-14JFF-0011-R4a-SM-5ZZV5
60-69 years, male
303.4
GTEX-NPJ7-0011-R4a-SM-2I3GJ
60-69 years, female
302.9
GTEX-11DYG-0011-R4b-SM-GJ3RG
60-69 years, male
298.7
GTEX-1LSVX-0011-R4b-SM-EXURP
60-69 years, male
298.6
GTEX-1MJK2-0011-R4a-SM-F3426
50-59 years, male
295.6
GTEX-1RDX4-0011-R4b-SM-F3K43
50-59 years, female
294.8
GTEX-1GTWX-0011-R4a-SM-C1YQI
60-69 years, male
294.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A
40-49 years, female
289.7
GTEX-13PLJ-0011-R4b-SM-GJ3R6
60-69 years, female
284.5
GTEX-13OW7-0011-R4b-SM-5O9CX
50-59 years, male
283.4
GTEX-17HG3-0011-R4a-SM-7IGLL
30-39 years, female
282.2
GTEX-14ABY-0011-R4b-SM-5S2VN
50-59 years, male
281.8
GTEX-YFC4-0011-R4a-SM-4RGLQ
40-49 years, female
279.5
GTEX-11TTK-0011-R4a-SM-DNZZU
60-69 years, female
276.5
GTEX-1LB8K-0011-R4b-SM-F6487
50-59 years, male
276.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ
30-39 years, male
276.1
GTEX-11PRG-0011-R4a-SM-DNZZR
50-59 years, male
275.1
GTEX-11NV4-0011-R4a-SM-GI4XC
60-69 years, male
274.8
GTEX-14ASI-0011-R4a-SM-69LQ4
60-69 years, male
273.2
GTEX-1J8EW-0011-R4b-SM-ARU89
60-69 years, female
272.1
GTEX-17EVQ-0011-R4b-SM-7LT94
70-79 years, male
271.0
GTEX-13X6J-0011-R4b-SM-5P9K4
50-59 years, male
270.6
GTEX-13QIC-0011-R4a-SM-5PNX8
60-69 years, female
270.3
GTEX-1F7RK-0011-R4b-SM-9QEI7
20-29 years, female
269.8
GTEX-13N2G-0011-R4b-SM-5MR54
60-69 years, male
268.7
GTEX-11GS4-0011-R4a-SM-GJ3RJ
60-69 years, male
267.3
GTEX-13CZV-0011-R4b-SM-5J2NY
60-69 years, male
265.7
GTEX-13SLX-0011-R4a-SM-5O9BJ
50-59 years, female
262.9
GTEX-13O3O-0011-R4b-SM-5KM3F
60-69 years, female
262.3
GTEX-1N2EF-0011-R4a-SM-F341F
60-69 years, male
262.2
GTEX-13N1W-0011-R4a-SM-5MR52
70-79 years, male
261.7
GTEX-1EMGI-0011-R4b-SM-CJI2D
60-69 years, male
261.3
GTEX-1H1ZS-0011-R4b-SM-CKZO7
70-79 years, male
259.0
GTEX-13FHO-0011-R4b-SM-H6611
60-69 years, male
257.5
GTEX-13RTJ-0011-R4b-SM-5PNX1
60-69 years, male
256.2
GTEX-1HB9E-0011-R4b-SM-ARZLS
50-59 years, male
251.9
GTEX-1QMI2-0011-R4b-SM-F3K4R
60-69 years, male
250.6
GTEX-111FC-0011-R4a-SM-GIN8K
60-69 years, male
249.5
GTEX-17F97-0011-R4b-SM-7KFS2
50-59 years, male
246.3
GTEX-1A3MX-0011-R4b-SM-7EWFK
60-69 years, male
244.7
GTEX-1JMQK-0011-R4a-SM-G8LLQ
60-69 years, male
244.5
GTEX-1N2EE-0011-R4a-SM-EXOII
60-69 years, male
240.6
GTEX-S7SE-0011-R4A-SM-2XCDB
50-59 years, male
240.2
GTEX-WZTO-0011-R4A-SM-3NMC7
40-49 years, male
237.6
GTEX-1GN73-0011-R4b-SM-9QEIK
60-69 years, male
237.2
GTEX-OHPN-0011-R4A-SM-2I5FD
60-69 years, female
235.9
GTEX-13SLW-0011-R4b-SM-5S2W2
70-79 years, male
233.6
GTEX-1OJC4-0011-R4a-SM-F3K54
50-59 years, female
231.4
GTEX-13NYB-0011-R4b-SM-9QEGJ
40-49 years, male
231.1
GTEX-17EVP-0011-R4a-SM-79OML
40-49 years, male
229.3
GTEX-14PN4-0011-R4a-SM-686ZT
50-59 years, male
228.0
GTEX-1RQED-0011-R4b-SM-F2I2X
60-69 years, male
226.1
GTEX-NL4W-0011-R4a-SM-2I5GZ
50-59 years, male
222.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y
60-69 years, male
220.0
GTEX-13X6K-0011-R4b-SM-5P9HO
60-69 years, female
219.0
GTEX-1JMOU-0011-R4b-SM-EY5ZL
60-69 years, female
218.9
GTEX-1RLM8-0011-R4a-SM-F2TBL
50-59 years, male
217.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ
60-69 years, male
217.3
GTEX-14PQA-0011-R4b-SM-6AJBU
50-59 years, female
215.5
GTEX-15SHU-0011-R4b-SM-7IGLC
40-49 years, female
213.6
GTEX-1117F-0011-R4b-SM-GI4VM
60-69 years, female
213.5
GTEX-11DXY-0011-R4b-SM-GI4VR
60-69 years, male
212.1
GTEX-QVJO-0011-R4A-SM-2S1QL
60-69 years, female
207.2
GTEX-12WSC-0011-R4a-SM-H6Q8M
50-59 years, male
206.3
GTEX-15DYW-0011-R4a-SM-6M46V
60-69 years, female
204.9
GTEX-13O3Q-0011-R4a-SM-5P9H2
50-59 years, male
199.5
GTEX-11NUK-0011-R4a-SM-DO12B
50-59 years, male
197.9
GTEX-1KWVE-0011-R4a-SM-F3K5X
30-39 years, male
196.9
GTEX-TSE9-0011-R4A-SM-3DB7H
60-69 years, female
196.5
GTEX-145LS-0011-R4b-SM-5S2UT
60-69 years, female
195.8
GTEX-1H3NZ-0011-R4a-SM-CL54T
60-69 years, male
193.6
GTEX-Q2AG-0011-R4A-SM-2HMKA
40-49 years, female
189.0
GTEX-139T8-0011-R4a-SM-5HL54
60-69 years, male
188.3
GTEX-WVLH-0011-R4A-SM-3MJFS
50-59 years, male
187.9
GTEX-12ZZW-0011-R4a-SM-5DUX9
50-59 years, male
186.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL
60-69 years, male
181.4
GTEX-1313W-0011-R4b-SM-5KLZV
50-59 years, female
179.0
GTEX-15DCD-0011-R4a-SM-69LPB
70-79 years, female
176.6
GTEX-1O9I2-0011-R4b-SM-F3K4K
50-59 years, male
175.9
GTEX-16YQH-0011-R4a-SM-7EPGI
30-39 years, male
175.6
GTEX-1LVAO-0011-R4a-SM-EXURO
60-69 years, male
174.3
GTEX-13OVJ-0011-R4b-SM-5P9H5
50-59 years, female
173.3
GTEX-131YS-0011-R4a-SM-5DUVL
60-69 years, female
171.3
GTEX-11GSO-0011-R4b-SM-GJ3R8
60-69 years, male
171.2
GTEX-13VXU-0011-R4b-SM-5O9CI
50-59 years, male
170.9
GTEX-1LVA9-0011-R4a-SM-F2TA2
50-59 years, male
168.4
GTEX-1H3O1-0011-R4b-SM-A9SKE
60-69 years, male
164.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ
60-69 years, female
160.1
GTEX-11OF3-0011-R4a-SM-GJ3RB
60-69 years, male
151.0
GTEX-NPJ8-0011-R4a-SM-2HML3
40-49 years, male
150.2
GTEX-15ER7-0011-R4a-SM-6M46S
20-29 years, female
148.1
GTEX-1F75A-0011-R4a-SM-ARL8J
50-59 years, male
147.2
GTEX-14JG1-0011-R4b-SM-62LEB
40-49 years, male
142.5
GTEX-14JIY-0011-R4b-SM-5ZZV7
60-69 years, male
138.2
GTEX-1GMR8-0011-R4a-SM-9OSX1
50-59 years, female
137.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2
60-69 years, male
136.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8
50-59 years, male
133.4
GTEX-15RJE-0011-R4a-SM-H7OH4
40-49 years, male
132.8
GTEX-13NYS-0011-R4b-SM-5MR3O
60-69 years, male
131.7
GTEX-1P4AB-0011-R4b-SM-F2T9S
50-59 years, male
131.6
GTEX-1399T-0011-R4b-SM-5DUVX
60-69 years, male
130.9
GTEX-13OW5-0011-R4b-SM-5L3HS
60-69 years, male
129.4
GTEX-15EO6-0011-R4a-SM-7KUKZ
50-59 years, male
101.5
GTEX-14BIM-0011-R4b-SM-5S2RK
60-69 years, female
101.1
GTEX-14BMV-0011-R4a-SM-H6Q7P
50-59 years, male
97.9
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AMYGDALA - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
190.4
Pig sample
Sample description
nTPM
Amygdala nTPM: 190.4
Samples: 4
Max nTPM: 302.9
Min nTPM: 113.3
Sample A
Female
145.5
Sample B
Female
302.9
Sample C
Male
200.0
Sample D
Male
113.3
AMYGDALA - Mouse RNA-seqi
RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
129.6
Mouse sample
Sample description
nTPM
Amygdala nTPM: 129.6
Samples: 4
Max nTPM: 188.7
Min nTPM: 104.8
Sample A
Male
111.2
Sample B
Male
104.8
Sample C
Female
188.7
Sample D
Female
113.6
AMYGDALA - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.
The Human Protein Atlas project is funded
