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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:367.6 nTPM
HPA Brain:172.6 nTPM
GTEx:367.6 nTPM
FANTOM5:164.1 Scaled Tags Per Million
Pig:192.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

172.6
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 137.1
1981 Female, age 72, midline 203.1
2048 Male, age 55, midline 152.1
2194 Female, age 79, both hemispheres 114.4
2565 Male, age 75, midline 111.5
2816 Male, age 47, midline 104.4
Cervical spinal cord, dorsal horn
nTPM: 172.6
2173 Female, age 72, unknown 243.2
2069 Male, age 47, both hemispheres 206.4
2296 Male, age 66, both hemispheres 172.5
2297 Male, age 75, both hemispheres 143.5
1877 Male, age 55, unknown 142.9
2721 Male, age 90, both hemispheres 127.1
Cervical spinal cord, ventral horn
nTPM: 148.2
2480 Male, age 75, both hemispheres 201.0
2098 Female, age 72, unknown 182.8
2295 Male, age 66, both hemispheres 151.1
2809 Male, age 90, both hemispheres 138.9
2068 Male, age 55, unknown 131.4
2820 Female, age 79, both hemispheres 84.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

367.6
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 367.6
Samples: 204

Max nTPM: 813.9
Min nTPM: 163.4
Std nTPM: 103.5
Median nTPM: 350.1
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 813.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 724.6
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 724.1
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 645.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 621.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 611.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 611.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 608.3
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 584.7
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 584.2
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 582.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 569.7
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 534.8
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 534.6
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 529.2
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 526.9
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 522.9
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 512.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 511.3
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 507.0
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 497.9
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 484.5
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 478.9
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 475.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 473.3
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 465.8
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 465.4
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 461.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 461.5
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 454.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 453.2
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 453.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 450.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 447.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 442.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 441.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 441.4
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 440.6
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 437.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 436.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 434.5
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 432.4
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 431.1
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 424.7
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 424.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 423.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 422.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 421.2
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 420.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 420.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 418.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 415.2
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 414.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 414.5
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 413.4
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 412.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 411.6
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 409.9
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 409.8
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 409.6
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 407.6
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 406.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 404.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 402.0
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 401.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 400.7
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 399.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 398.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 398.2
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 395.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 395.6
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 395.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 393.8
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 391.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 391.8
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 390.4
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 388.7
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 387.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 385.9
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 384.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 384.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 383.5
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 382.6
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 379.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 378.5
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 378.0
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 377.7
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 374.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 371.9
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 369.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 369.7
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 367.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 361.3
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 357.9
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 357.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 356.5
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 356.5
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 356.4
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 352.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 351.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 351.1
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 350.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 349.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 349.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 349.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 347.3
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 342.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 341.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 340.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 339.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 338.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 337.5
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 336.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 336.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 335.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 335.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 333.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 331.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 330.9
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 330.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 329.9
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 329.6
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 329.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 329.0
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 328.8
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 328.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 328.0
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 324.5
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 324.5
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 324.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 323.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 322.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 321.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 321.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 320.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 316.2
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 316.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 315.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 314.9
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 314.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 313.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 310.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 310.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 309.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 309.6
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 309.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 308.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 308.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 307.9
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 306.5
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 303.9
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 301.6
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 299.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 297.3
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 296.9
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 296.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 294.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 294.0
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 291.8
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 291.8
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 290.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 288.1
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 287.9
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 286.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 286.1
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 285.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 282.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 280.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 280.4
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 280.0
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 279.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 271.9
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 270.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 269.7
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 268.0
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 265.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 263.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 262.2
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 260.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 256.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 253.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 253.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 252.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 245.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 243.8
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 242.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 241.9
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 238.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 238.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 236.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 232.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 231.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 230.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 230.2
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 225.0
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 223.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 220.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 219.5
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 217.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 214.7
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 213.3
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 190.7
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 177.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 163.4
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

164.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 164.1
FF:10181-103D1 60 years, female 190.9
FF:10159-103A6 76 years, female 137.4

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

192.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 161.9
Samples: 4

Max nTPM: 176.7
Min nTPM: 145.9
Sample A Female 176.7
Sample B Female 152.1
Sample C Male 172.8
Sample D Male 145.9
Ventral spinal cord
nTPM: 192.0
Samples: 4

Max nTPM: 232.8
Min nTPM: 158.7
Sample A Female 168.4
Sample B Female 232.8
Sample C Male 208.0
Sample D Male 158.7

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