We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SNAPC5
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • SNAPC5
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:30.8 nTPM
FANTOM5:41.4 Scaled Tags Per Million
Pig:6.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA024379
Glial cells Not detected
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

30.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 30.8
Samples: 300

Max nTPM: 68.5
Min nTPM: 14.5
Std nTPM: 9.0
Median nTPM: 29.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 68.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 68.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 63.7
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 63.2
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 62.1
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 57.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 57.6
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 57.4
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 52.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 51.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 50.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 49.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 49.0
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 47.7
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 47.0
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 45.6
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 45.0
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 44.6
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 44.0
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 43.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 43.5
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 43.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 42.9
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 42.9
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 42.6
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 42.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 41.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 41.6
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 41.6
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 41.2
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 40.9
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 40.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 40.9
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 40.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 40.7
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 40.7
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 40.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 40.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 40.1
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 40.0
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 40.0
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 39.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 39.7
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 39.7
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 39.6
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 39.4
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 39.4
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 38.9
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 38.6
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 38.4
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 38.2
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 38.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 37.9
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 37.8
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 37.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 37.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 37.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 37.4
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 37.4
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 37.3
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 37.3
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 37.2
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 37.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 37.0
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 36.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 36.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 36.6
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 36.3
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 36.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 36.2
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 36.1
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 36.1
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 35.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 35.7
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 35.6
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 35.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 35.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 35.3
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 35.0
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 34.9
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 34.8
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 34.7
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 34.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 34.4
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 34.3
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 34.3
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 34.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 34.0
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 33.9
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 33.8
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 33.6
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 33.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 33.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 33.5
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 33.4
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 33.1
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 33.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 33.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 33.0
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 33.0
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 33.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 32.9
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 32.9
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 32.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 32.7
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 32.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 32.5
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 32.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 32.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 32.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 32.3
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 32.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 32.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 32.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 32.0
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 31.9
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 31.8
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 31.2
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 31.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 31.1
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 31.0
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 31.0
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 30.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 30.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 30.8
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 30.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 30.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 30.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 30.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 30.4
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 30.3
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 30.3
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 30.3
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 30.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 30.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 30.2
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 30.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 30.2
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 30.0
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 30.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 30.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 30.0
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 29.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 29.9
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 29.8
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 29.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 29.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 29.4
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 29.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 29.4
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 29.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 29.3
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 29.2
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 29.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 29.2
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 29.1
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 29.1
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 29.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 28.9
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 28.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 28.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 28.8
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 28.8
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 28.7
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 28.7
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 28.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 28.5
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 28.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 28.2
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 28.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 27.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 27.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 27.8
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 27.8
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 27.8
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 27.7
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 27.7
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 27.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 27.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 27.6
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 27.6
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 27.6
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 27.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 27.5
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 27.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 27.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 27.4
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 27.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 27.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 27.0
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 27.0
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 27.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 26.9
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 26.8
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 26.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 26.6
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 26.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 26.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 26.4
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 26.4
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 26.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 26.3
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 26.2
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 26.0
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 25.9
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 25.7
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 25.7
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 25.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 25.6
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 25.5
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 25.5
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 25.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 25.2
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 25.2
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 25.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 25.1
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 24.7
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 24.7
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 24.7
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 24.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 24.5
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 24.4
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 24.3
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 24.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 24.2
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 24.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 24.2
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 24.2
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 24.1
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 24.1
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 24.1
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 24.0
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 23.8
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 23.8
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 23.8
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 23.8
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 23.7
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 23.6
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 23.4
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 23.4
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 23.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 23.3
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 23.3
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 23.3
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 23.3
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 23.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 23.1
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 23.0
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 23.0
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 22.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 22.9
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 22.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 22.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 22.8
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 22.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 22.6
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 22.6
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 22.3
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 22.3
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 22.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 22.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 21.8
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 21.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 21.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 21.5
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 21.4
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 21.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 21.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 20.7
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 20.7
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 20.6
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 20.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 20.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 20.4
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 20.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 20.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 20.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 20.0
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 19.9
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 19.7
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 19.7
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 19.6
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 19.6
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 19.4
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 19.4
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 19.3
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 19.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 18.8
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 18.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 18.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 18.5
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 17.7
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 17.6
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 17.5
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 17.4
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 16.6
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 15.5
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 15.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 14.6
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 14.5
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

41.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 41.4
FF:10164-103B2 76 years, female 41.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

6.1
Pig sample Sample description nTPM
Caudate
nTPM: 6.1
Samples: 4

Max nTPM: 7.0
Min nTPM: 5.5
Sample A Female 5.6
Sample B Female 6.2
Sample C Male 7.0
Sample D Male 5.5

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo