MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:207.0 nTPM
HPA Brain:113.0 nTPM
GTEx:207.0 nTPM
FANTOM5:57.4 Scaled Tags Per Million
Pig:45.1 nTPM
Mouse:110.2 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 113.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.1
2019 Male, age 18, unknown 123.3
2411 Female, age 72, unknown 107.6
1827 Male, age 72, unknown 100.7
2586 Male, age 75, left hemisphere 100.3
2828 Female, age 72, unknown 97.0
2666 Male, age 74, left hemisphere 90.5
2219 Male, age 76, both hemispheres 88.4
1870 Female, age 42, unknown 87.5
1833 Male, age 53, unknown 85.6
1830 Male, age 51, unknown 80.5
Dorsal raphe nucleus
nTPM: 105.4
2298 Female, age 72, unknown 122.5
2750 Male, age 76, both hemispheres 108.7
1828 Male, age 53, unknown 104.6
2047 Male, age 72, unknown 101.6
2016 Female, age 72, unknown 89.7
Inferior colliculus
nTPM: 89.1
1890 Male, age 53, unknown 96.4
2097 Female, age 72, unknown 95.2
2849 Male, age 72, unknown 83.5
1848 Female, age 42, unknown 81.4
Median raphe nucleus
nTPM: 109.0
2220 Male, age 76, midline 109.0
Periaquaductal grey, anterior
nTPM: 102.9
1795 Male, age 51, unknown 110.4
1947 Male, age 18, unknown 102.7
2502 Female, age 75, unknown 95.7
Periaquaductal grey, dorsal
nTPM: 83.4
1840 Male, age 53, unknown 89.3
2850 Male, age 76, both hemispheres 84.4
1831 Male, age 72, unknown 80.4
2464 Female, age 72, unknown 79.6
Periaquaductal grey, lateral
nTPM: 93.4
2272 Male, age 74, both hemispheres 119.8
2053 Male, age 18, unknown 86.6
2140 Male, age 76, both hemispheres 73.9
Pretectal area
nTPM: 110.1
2007 Male, age 72, unknown 147.9
1817 Female, age 42, unknown 131.1
1944 Female, age 72, unknown 129.1
1816 Male, age 51, unknown 124.8
1815 Male, age 53, unknown 113.1
2273 Male, age 74, both hemispheres 113.0
2667 Female, age 75, unknown 104.7
2224 Female, age 72, unknown 99.0
2825 Male, age 18, unknown 86.2
2407 Male, age 75, both hemispheres 83.7
2316 Male, age 76, right hemisphere 77.9
Red nucleus
nTPM: 104.0
1821 Female, age 72, unknown 117.4
2725 Female, age 75, unknown 117.2
2785 Male, age 18, unknown 115.2
2588 Male, age 74, left hemisphere 105.7
2503 Female, age 72, unknown 105.6
2769 Male, age 72, unknown 103.2
1865 Male, age 51, unknown 102.9
1904 Male, age 53, unknown 100.3
2227 Male, age 72, unknown 98.2
1954 Female, age 42, unknown 94.8
2823 Male, age 76, right hemisphere 94.2
2584 Male, age 75, left hemisphere 92.8
Substantia nigra
nTPM: 113.0
1916 Female, age 42, unknown 148.6
1851 Male, age 51, unknown 138.6
1889 Female, age 72, unknown 127.7
1941 Male, age 53, unknown 118.3
2665 Male, age 74, both hemispheres 107.2
2590 Female, age 75, unknown 101.1
2699 Male, age 18, unknown 99.9
2409 Female, age 72, unknown 98.4
2241 Male, age 72, unknown 98.3
2583 Male, age 75, right hemisphere 92.1
Superior colliculus
nTPM: 97.1
2087 Female, age 72, unknown 108.8
2668 Female, age 75, unknown 104.6
1796 Male, age 53, unknown 104.4
2261 Male, age 18, unknown 99.7
2587 Male, age 74, left hemisphere 99.3
2664 Male, age 75, both hemispheres 95.3
1913 Female, age 42, unknown 93.6
1995 Male, age 72, unknown 91.7
1895 Male, age 76, right hemisphere 89.3
1839 Male, age 51, unknown 84.1
Ventral tegmental area
nTPM: 109.8
2218 Male, age 76, both hemispheres 125.0
2410 Female, age 72, unknown 118.4
1915 Female, age 42, unknown 117.5
2223 Female, age 72, unknown 109.8
1942 Male, age 51, unknown 97.2
2021 Male, age 53, unknown 90.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 207.0
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 207.0
Samples: 183

Max nTPM: 388.5
Min nTPM: 86.7
Std nTPM: 53.1
Median nTPM: 198.3
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 388.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 352.1
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 347.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 342.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 333.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 329.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 322.4
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 318.5
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 313.2
GTEX-1PPGY-0011-R2b-SM-F33YW 60-69 years, male 312.6
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 305.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 57.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.4
FF:10158-103A5 76 years, female 57.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 37.6
Samples: 4

Max nTPM: 58.3
Min nTPM: 20.5
Sample A Female 58.3
Sample B Female 31.5
Sample C Male 40.2
Sample D Male 20.5
Midbrain
nTPM: 39.5
Samples: 4

Max nTPM: 46.6
Min nTPM: 33.0
Sample A Female 40.4
Sample B Female 38.0
Sample C Male 46.6
Sample D Male 33.0
Periaqueductal gray
nTPM: 30.5
Samples: 3

Max nTPM: 35.4
Min nTPM: 27.0
Sample B Female 29.2
Sample C Male 35.4
Sample D Male 27.0
Superior colliculi
nTPM: 45.1
Samples: 4

Max nTPM: 54.3
Min nTPM: 35.0
Sample A Female 54.3
Sample B Female 42.2
Sample C Male 49.0
Sample D Male 35.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 110.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 110.2
Samples: 4

Max nTPM: 120.6
Min nTPM: 98.8
Sample A Male 120.6
Sample B Male 106.6
Sample C Female 98.8
Sample D Female 114.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68844217 Antisense, RP_050222_01_B06, Mouse strain C57BL/6J (56 days, male) 0.2

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