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A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
6.5
nTPM
Monaco:
39.4
nTPM
Schmiedel:
5.9
TPM
T-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
6.5
HPA sample
nTPM
gdT-cell nTPM: 4.5
Samples: 6
Max nTPM: 5.5
Min nTPM: 2.5
P10809_1007
4.8
P10809_1022
5.3
P10809_1041
3.8
P10809_1060
5.5
P10809_1077
5.0
P10809_1098
2.5
MAIT T-cell nTPM: 6.0
Samples: 6
Max nTPM: 8.5
Min nTPM: 3.4
P10809_1006
6.6
P10809_1024
3.4
P10809_1043
6.8
P10809_1062
4.3
P10809_1083
8.5
P10809_1097
6.1
Memory CD4 T-cell nTPM: 2.9
Samples: 6
Max nTPM: 3.8
Min nTPM: 2.0
P10809_1014
3.2
P10809_1026
2.2
P10809_1045
2.5
P10809_1064
2.0
P10809_1086
3.8
P10809_1113
3.4
Memory CD8 T-cell nTPM: 4.2
Samples: 5
Max nTPM: 5.2
Min nTPM: 2.7
P10809_1012
4.8
P10809_1027
3.6
P10809_1046
4.7
P10809_1065
2.7
P10809_1111
5.2
Naive CD4 T-cell nTPM: 3.9
Samples: 6
Max nTPM: 8.3
Min nTPM: 1.9
P10809_1015
2.8
P10809_1030
2.7
P10809_1049
5.7
P10809_1068
2.1
P10809_1085
8.3
P10809_1112
1.9
Naive CD8 T-cell nTPM: 4.9
Samples: 6
Max nTPM: 7.3
Min nTPM: 2.8
P10809_1016
4.8
P10809_1031
3.4
P10809_1050
7.3
P10809_1069
2.8
P10809_1087
4.6
P10809_1110
6.5
T-reg nTPM: 6.5
Samples: 6
Max nTPM: 10.6
Min nTPM: 1.4
P10809_1018
6.7
P10809_1037
1.4
P10809_1056
10.6
P10809_1075
6.8
P10809_1094
8.9
P10809_1106
4.8
T-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
39.4
Monaco sample
nTPM
Central memory CD8 T-cell nTPM: 29.8
Samples: 4
Max nTPM: 38.8
Min nTPM: 18.0
RHH5202_R3573
34.6
RHH5230_R3602
38.8
RHH5259_R3631
18.0
RHH5288_R3660
27.6
Effector memory CD8 T-cell nTPM: 28.2
Samples: 4
Max nTPM: 42.6
Min nTPM: 13.6
RHH5203_R3574
13.6
RHH5231_R3603
42.6
RHH5260_R3632
28.3
RHH5289_R3661
28.2
MAIT T-cell nTPM: 36.4
Samples: 4
Max nTPM: 45.7
Min nTPM: 25.8
RHH5233_R3605
43.1
RHH5205_R3576
30.9
RHH5262_R3634
25.8
RHH5297_R3663
45.7
Memory CD4 T-cell TFH nTPM: 27.4
Samples: 4
Max nTPM: 47.1
Min nTPM: 13.7
RHH5300_R3666
13.7
RHH5236_R3608
25.0
RHH5265_R3637
23.9
RHH5208_R3579
47.1
Memory CD4 T-cell Th1 nTPM: 18.0
Samples: 4
Max nTPM: 22.4
Min nTPM: 14.7
RHH5210_R3581
18.2
RHH5302_R3668
14.7
RHH5238_R3610
16.7
RHH5267_R3639
22.4
Memory CD4 T-cell Th1/Th17 nTPM: 23.8
Samples: 4
Max nTPM: 38.0
Min nTPM: 15.2
RHH5303_R3669
15.2
RHH5211_R3582
19.1
RHH5239_R3611
38.0
RHH5268_R3640
23.0
Memory CD4 T-cell Th17 nTPM: 22.0
Samples: 4
Max nTPM: 28.1
Min nTPM: 16.5
RHH5304_R3670
18.1
RHH5212_R3583
25.1
RHH5240_R3612
16.5
RHH5269_R3641
28.1
Memory CD4 T-cell Th2 nTPM: 20.3
Samples: 4
Max nTPM: 27.1
Min nTPM: 15.2
RHH5305_R3671
18.6
RHH5213_R3584
20.1
RHH5241_R3613
15.2
RHH5270_R3642
27.1
Naive CD4 T-cell nTPM: 19.3
Samples: 4
Max nTPM: 23.6
Min nTPM: 13.5
RHH5306_R3672
21.2
RHH5214_R3585
13.5
RHH5242_R3614
23.6
RHH5271_R3643
19.0
Naive CD8 T-cell nTPM: 39.5
Samples: 4
Max nTPM: 56.8
Min nTPM: 22.1
RHH5201_R3572
56.8
RHH5229_R3601
22.1
RHH5258_R3630
37.2
RHH5287_R3659
41.7
Non-Vd2 gdTCR nTPM: 31.2
Samples: 4
Max nTPM: 40.6
Min nTPM: 21.4
RHH5235_R3607
21.4
RHH5264_R3636
33.6
RHH5207_R3578
29.3
RHH5299_R3665
40.6
T-reg nTPM: 27.3
Samples: 4
Max nTPM: 32.4
Min nTPM: 19.5
RHH5301_R3667
31.0
RHH5237_R3609
32.4
RHH5266_R3638
19.5
RHH5209_R3580
26.4
Terminal effector memory CD4 T-cell nTPM: 17.6
Samples: 2
Max nTPM: 18.9
Min nTPM: 16.3
RHH5243_R3615
18.9
RHH5272_R3644
16.3
Terminal effector memory CD8 T-cell nTPM: 26.3
Samples: 4
Max nTPM: 38.3
Min nTPM: 15.3
RHH5232_R3604
38.3
RHH5204_R3575
15.3
RHH5261_R3633
23.2
RHH5296_R3662
28.2
Vd2 gdTCR nTPM: 32.9
Samples: 4
Max nTPM: 55.0
Min nTPM: 15.4
RHH5234_R3606
27.4
RHH5206_R3577
15.4
RHH5263_R3635
55.0
RHH5298_R3664
33.9
T-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
The Human Protein Atlas project is funded
