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  • COX8A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:318.5 nTPM
HPA Brain:321.1 nTPM
GTEx:318.5 nTPM
FANTOM5:273.0 Scaled Tags Per Million
Pig:587.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

321.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 285.4
1981 Female, age 72, midline 372.1
2194 Female, age 79, both hemispheres 317.1
2565 Male, age 75, midline 310.4
2048 Male, age 55, midline 218.4
2816 Male, age 47, midline 209.0
Cervical spinal cord, dorsal horn
nTPM: 299.1
2173 Female, age 72, unknown 418.7
2069 Male, age 47, both hemispheres 343.2
2296 Male, age 66, both hemispheres 280.2
2297 Male, age 75, both hemispheres 277.5
1877 Male, age 55, unknown 253.9
2721 Male, age 90, both hemispheres 221.0
Cervical spinal cord, ventral horn
nTPM: 321.1
2809 Male, age 90, both hemispheres 372.1
2480 Male, age 75, both hemispheres 367.8
2098 Female, age 72, unknown 366.9
2068 Male, age 55, unknown 292.2
2295 Male, age 66, both hemispheres 266.8
2820 Female, age 79, both hemispheres 260.5

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

318.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 318.5
Samples: 204

Max nTPM: 514.9
Min nTPM: 205.8
Std nTPM: 60.6
Median nTPM: 303.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 514.9
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 509.4
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 494.3
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 493.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 459.2
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 452.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 452.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 451.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 445.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 441.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 428.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 428.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 422.7
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 416.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 415.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 414.3
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 412.7
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 411.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 406.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 401.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 397.9
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 395.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 395.1
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 394.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 394.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 393.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 390.8
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 390.4
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 387.7
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 386.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 386.2
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 385.8
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 382.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 380.4
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 378.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 376.6
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 375.9
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 375.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 374.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 372.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 372.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 370.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 368.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 366.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 364.5
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 363.4
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 363.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 360.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 359.3
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 357.9
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 356.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 356.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 354.6
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 354.2
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 354.2
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 351.1
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 349.5
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 349.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 348.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 344.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 343.6
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 342.5
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 341.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 341.0
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 340.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 339.9
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 339.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 337.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 337.0
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 336.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 335.6
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 334.6
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 333.4
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 332.1
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 330.3
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 328.0
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 326.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 324.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 324.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 323.9
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 323.7
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 322.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 322.3
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 318.1
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 317.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 317.4
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 315.4
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 314.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 314.3
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 313.7
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 313.2
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 312.3
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 311.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 311.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 310.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 310.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 310.5
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 307.5
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 307.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 305.5
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 304.9
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 303.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 303.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 302.1
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 301.7
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 300.7
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 300.1
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 300.0
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 300.0
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 299.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 299.2
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 298.4
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 298.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 298.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 297.7
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 297.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 297.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 296.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 295.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 295.6
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 293.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 292.5
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 289.2
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 288.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 288.8
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 288.8
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 288.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 287.8
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 287.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 287.4
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 287.0
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 286.4
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 286.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 285.4
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 284.9
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 284.9
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 284.8
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 284.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 282.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 281.7
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 279.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 279.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 278.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 278.5
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 278.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 277.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 277.4
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 276.3
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 275.9
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 275.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 275.1
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 275.1
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 274.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 274.3
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 273.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 273.2
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 273.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 272.5
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 272.4
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 272.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 270.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 269.9
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 269.5
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 267.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 266.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 265.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 264.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 263.3
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 263.3
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 263.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 263.0
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 261.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 261.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 261.2
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 260.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 260.2
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 260.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 259.4
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 259.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 258.2
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 257.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 256.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 253.6
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 253.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 252.9
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 251.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 250.9
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 250.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 250.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 248.9
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 248.6
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 245.0
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 244.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 240.5
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 239.0
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 238.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 238.4
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 229.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 226.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 221.3
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 218.6
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 209.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 206.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 205.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

273.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 273.0
FF:10181-103D1 60 years, female 398.2
FF:10159-103A6 76 years, female 147.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

587.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 492.3
Samples: 4

Max nTPM: 545.3
Min nTPM: 438.2
Sample A Female 545.3
Sample B Female 438.2
Sample C Male 498.5
Sample D Male 487.2
Ventral spinal cord
nTPM: 587.0
Samples: 4

Max nTPM: 647.2
Min nTPM: 472.8
Sample A Female 594.6
Sample B Female 647.2
Sample C Male 633.5
Sample D Male 472.8

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