MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.1 nTPM
HPA Brain:2.8 nTPM
GTEx:8.1 nTPM
FANTOM5:5.8 Scaled Tags Per Million
Pig:86.9 nTPM
Mouse:2.3 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 2.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 1.6
2666 Male, age 74, left hemisphere 4.5
1830 Male, age 51, unknown 2.0
1870 Female, age 42, unknown 1.8
1833 Male, age 53, unknown 1.7
1827 Male, age 72, unknown 1.3
2586 Male, age 75, left hemisphere 1.3
2019 Male, age 18, unknown 1.1
2828 Female, age 72, unknown 1.0
2411 Female, age 72, unknown 0.8
2219 Male, age 76, both hemispheres 0.6
Dorsal raphe nucleus
nTPM: 1.2
2016 Female, age 72, unknown 1.8
2750 Male, age 76, both hemispheres 1.3
1828 Male, age 53, unknown 1.1
2047 Male, age 72, unknown 0.9
2298 Female, age 72, unknown 0.7
Inferior colliculus
nTPM: 1.8
1890 Male, age 53, unknown 3.4
2849 Male, age 72, unknown 1.3
1848 Female, age 42, unknown 1.2
2097 Female, age 72, unknown 1.1
Median raphe nucleus
nTPM: 1.6
2220 Male, age 76, midline 1.6
Periaquaductal grey, anterior
nTPM: 2.8
2502 Female, age 75, unknown 3.9
1947 Male, age 18, unknown 3.7
1795 Male, age 51, unknown 0.7
Periaquaductal grey, dorsal
nTPM: 0.9
1831 Male, age 72, unknown 1.2
1840 Male, age 53, unknown 1.0
2464 Female, age 72, unknown 0.9
2850 Male, age 76, both hemispheres 0.5
Periaquaductal grey, lateral
nTPM: 1.0
2053 Male, age 18, unknown 1.3
2272 Male, age 74, both hemispheres 1.3
2140 Male, age 76, both hemispheres 0.5
Pretectal area
nTPM: 1.1
1817 Female, age 42, unknown 2.1
2407 Male, age 75, both hemispheres 1.6
2316 Male, age 76, right hemisphere 1.3
1815 Male, age 53, unknown 1.2
2825 Male, age 18, unknown 1.1
2007 Male, age 72, unknown 1.0
1816 Male, age 51, unknown 0.7
1944 Female, age 72, unknown 0.7
2224 Female, age 72, unknown 0.7
2273 Male, age 74, both hemispheres 0.7
2667 Female, age 75, unknown 0.7
Red nucleus
nTPM: 2.3
1865 Male, age 51, unknown 4.7
2823 Male, age 76, right hemisphere 3.3
1954 Female, age 42, unknown 2.8
2503 Female, age 72, unknown 2.4
1904 Male, age 53, unknown 2.1
2227 Male, age 72, unknown 2.0
2584 Male, age 75, left hemisphere 2.0
2769 Male, age 72, unknown 2.0
2725 Female, age 75, unknown 1.7
1821 Female, age 72, unknown 1.6
2588 Male, age 74, left hemisphere 1.6
2785 Male, age 18, unknown 1.1
Substantia nigra
nTPM: 2.4
2590 Female, age 75, unknown 4.5
2665 Male, age 74, both hemispheres 3.7
1851 Male, age 51, unknown 3.1
2583 Male, age 75, right hemisphere 2.9
2241 Male, age 72, unknown 2.6
2409 Female, age 72, unknown 2.3
2699 Male, age 18, unknown 1.9
1916 Female, age 42, unknown 1.6
1889 Female, age 72, unknown 1.0
1941 Male, age 53, unknown 0.5
Superior colliculus
nTPM: 1.5
2587 Male, age 74, left hemisphere 2.1
1995 Male, age 72, unknown 1.9
2087 Female, age 72, unknown 1.9
2261 Male, age 18, unknown 1.8
1796 Male, age 53, unknown 1.6
1913 Female, age 42, unknown 1.6
1895 Male, age 76, right hemisphere 1.4
1839 Male, age 51, unknown 1.2
2664 Male, age 75, both hemispheres 1.2
2668 Female, age 75, unknown 0.5
Ventral tegmental area
nTPM: 2.0
2223 Female, age 72, unknown 2.5
1915 Female, age 42, unknown 2.2
2021 Male, age 53, unknown 2.0
1942 Male, age 51, unknown 1.9
2218 Male, age 76, both hemispheres 1.8
2410 Female, age 72, unknown 1.8

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.1
Samples: 183

Max nTPM: 39.0
Min nTPM: 0.7
Std nTPM: 6.9
Median nTPM: 5.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 39.0
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 36.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 32.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 27.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.8
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 26.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 25.5
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 25.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 22.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 22.0
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 20.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.8
FF:10158-103A5 76 years, female 5.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 86.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 86.9
Samples: 4

Max nTPM: 96.4
Min nTPM: 71.5
Sample A Female 84.9
Sample B Female 94.8
Sample C Male 96.4
Sample D Male 71.5
Midbrain
nTPM: 67.0
Samples: 4

Max nTPM: 88.8
Min nTPM: 45.9
Sample A Female 88.8
Sample B Female 53.1
Sample C Male 80.3
Sample D Male 45.9
Periaqueductal gray
nTPM: 47.5
Samples: 3

Max nTPM: 56.2
Min nTPM: 33.9
Sample B Female 52.4
Sample C Male 56.2
Sample D Male 33.9
Superior colliculi
nTPM: 64.8
Samples: 4

Max nTPM: 98.2
Min nTPM: 41.7
Sample A Female 50.8
Sample B Female 41.7
Sample C Male 98.2
Sample D Male 68.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 2.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 2.3
Samples: 4

Max nTPM: 2.7
Min nTPM: 1.8
Sample A Male 1.8
Sample B Male 2.1
Sample C Female 2.7
Sample D Female 2.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
68341573 Antisense, RP_041207_01_G08, Mouse strain C57BL/6J (56 days, male) 0.2

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