We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
TALDO1
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • TALDO1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:99.8 nTPM
HPA Brain:73.8 nTPM
GTEx:99.8 nTPM
FANTOM5:118.7 Scaled Tags Per Million
Pig:56.1 nTPM
Mouse:136.3 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.8
Sample id Sample description nTPM
Amygdala
nTPM: 73.8
2514 Male, age 75, right hemisphere 87.3
2814 Male, age 76, right hemisphere 80.9
1987 Female, age 91, left hemisphere 76.6
2695 Female, age 67, right hemisphere 62.5
2517 Female, age 94, left hemisphere 61.5
Basal amygdala
nTPM: 56.4
2110 Male, age 80, left hemisphere 71.7
1955 Male, age 76, both hemispheres 61.0
2609 Male, age 75, right hemisphere 56.5
2685 Female, age 94, left hemisphere 54.9
2243 Female, age 91, right hemisphere 52.4
2827 Female, age 67, right hemisphere 42.3
Central amygdala
nTPM: 63.2
2515 Male, age 75, right hemisphere 70.9
1905 Male, age 76, both hemispheres 70.0
2239 Male, age 80, left hemisphere 62.7
2826 Female, age 94, left hemisphere 58.9
2701 Female, age 91, right hemisphere 53.3
Corticomedial amygdala
nTPM: 56.1
2428 Male, age 75, right hemisphere 68.6
2829 Male, age 80, left hemisphere 60.5
2242 Female, age 91, right hemisphere 59.0
2429 Female, age 94, left hemisphere 58.2
2240 Male, age 76, both hemispheres 49.9
2535 Female, age 67, right hemisphere 40.0
Lateral amygdala
nTPM: 60.7
1883 Male, age 76, both hemispheres 75.4
2516 Male, age 75, right hemisphere 66.6
2534 Female, age 94, left hemisphere 60.7
2256 Male, age 80, left hemisphere 59.0
2255 Female, age 91, right hemisphere 56.5
2830 Female, age 67, right hemisphere 45.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

99.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 99.8
Samples: 181

Max nTPM: 278.2
Min nTPM: 62.8
Std nTPM: 23.9
Median nTPM: 95.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 278.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 176.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 164.4
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 158.1
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 154.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 154.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 146.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 138.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 135.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 134.2
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 133.3
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 132.1
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 130.5
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 128.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 125.6
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 125.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 124.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 124.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.2
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 122.7
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 122.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 121.8
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 121.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 121.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 119.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 119.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 119.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 118.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 118.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 118.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 118.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 117.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 117.8
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 117.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 117.7
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 117.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 117.1
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 117.0
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 115.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 115.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 114.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 112.7
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 112.5
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 111.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 111.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 111.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 110.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 110.0
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 109.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 109.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 108.1
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 108.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 107.9
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 107.1
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 106.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 106.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 105.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 105.4
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 105.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 104.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 104.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 104.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 104.3
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 103.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 102.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 102.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 102.8
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 101.9
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 101.8
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 101.7
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 101.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 101.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 100.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 99.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 99.1
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 99.0
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 98.7
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 98.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 98.6
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 98.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 98.3
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 98.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 97.8
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 97.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 97.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 97.3
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 97.1
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 97.0
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 96.0
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 95.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 95.5
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 94.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 94.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 94.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 94.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 94.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 94.0
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.0
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 93.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 93.9
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 92.6
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 92.2
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 91.8
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 91.0
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 90.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 90.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 90.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 90.6
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 90.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 90.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 89.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 89.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 89.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 89.3
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 89.1
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 89.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 89.1
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 88.7
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 88.3
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 87.8
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 87.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 87.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 87.0
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 86.6
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 86.4
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 86.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 85.6
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 85.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 85.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 85.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 84.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 84.6
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 84.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 84.6
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 84.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 84.0
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 83.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 83.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 83.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 82.7
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 81.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 81.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 81.5
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 81.1
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 80.5
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.5
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 80.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 80.3
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 79.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 79.6
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 79.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 79.2
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 79.2
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 79.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 78.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 77.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 77.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 76.7
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 76.5
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 76.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 75.6
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 75.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 75.2
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 74.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 74.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 74.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 74.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 73.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 73.4
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 73.2
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 72.8
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 71.9
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 71.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 71.5
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 69.5
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 67.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 67.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 62.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

118.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 118.7
FF:10151-102I7 76 years, female 118.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

56.1
Pig sample Sample description nTPM
Amygdala
nTPM: 56.1
Samples: 4

Max nTPM: 70.4
Min nTPM: 48.6
Sample A Female 70.4
Sample B Female 53.3
Sample C Male 48.6
Sample D Male 52.0

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

136.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 136.3
Samples: 4

Max nTPM: 146.1
Min nTPM: 129.4
Sample A Male 129.4
Sample B Male 136.7
Sample C Female 146.1
Sample D Female 132.9

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.0
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.0
74988562 Antisense, RP_060315_05_F01, Mouse strain C57BL/6J (56 days, male) 4.5
70474035 Antisense, RP_050614_04_G06, Mouse strain C57BL/6J (56 days, male) 3.4

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo