MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.3 nTPM
HPA Brain:84.8 nTPM
GTEx:43.3 nTPM
FANTOM5:43.1 Scaled Tags Per Million
Pig:21.6 nTPM
Mouse:8.9 nTPM
Allen mouse:1.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 84.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.5
2019 Male, age 18, unknown 97.4
1830 Male, age 51, unknown 78.6
1833 Male, age 53, unknown 71.5
1870 Female, age 42, unknown 66.6
2666 Male, age 74, left hemisphere 65.3
2411 Female, age 72, unknown 64.9
2828 Female, age 72, unknown 62.0
2586 Male, age 75, left hemisphere 51.2
1827 Male, age 72, unknown 41.1
2219 Male, age 76, both hemispheres 36.6
Dorsal raphe nucleus
nTPM: 51.1
2750 Male, age 76, both hemispheres 60.4
1828 Male, age 53, unknown 59.5
2016 Female, age 72, unknown 53.2
2298 Female, age 72, unknown 43.1
2047 Male, age 72, unknown 39.0
Inferior colliculus
nTPM: 46.2
1890 Male, age 53, unknown 57.1
2097 Female, age 72, unknown 43.4
1848 Female, age 42, unknown 43.3
2849 Male, age 72, unknown 41.3
Median raphe nucleus
nTPM: 37.7
2220 Male, age 76, midline 37.7
Periaquaductal grey, anterior
nTPM: 45.4
2502 Female, age 75, unknown 51.7
1795 Male, age 51, unknown 44.5
1947 Male, age 18, unknown 40.0
Periaquaductal grey, dorsal
nTPM: 43.4
2850 Male, age 76, both hemispheres 55.0
1831 Male, age 72, unknown 51.0
2464 Female, age 72, unknown 44.3
1840 Male, age 53, unknown 23.3
Periaquaductal grey, lateral
nTPM: 50.7
2272 Male, age 74, both hemispheres 57.4
2140 Male, age 76, both hemispheres 52.5
2053 Male, age 18, unknown 42.3
Pretectal area
nTPM: 44.2
2273 Male, age 74, both hemispheres 55.3
1817 Female, age 42, unknown 54.3
1815 Male, age 53, unknown 53.8
2407 Male, age 75, both hemispheres 49.7
2007 Male, age 72, unknown 48.6
2316 Male, age 76, right hemisphere 48.6
2825 Male, age 18, unknown 42.6
2667 Female, age 75, unknown 37.3
2224 Female, age 72, unknown 36.9
1944 Female, age 72, unknown 31.2
1816 Male, age 51, unknown 27.6
Red nucleus
nTPM: 84.8
2785 Male, age 18, unknown 100.9
2769 Male, age 72, unknown 96.9
1865 Male, age 51, unknown 95.8
1904 Male, age 53, unknown 95.7
2227 Male, age 72, unknown 95.4
1821 Female, age 72, unknown 92.9
2588 Male, age 74, left hemisphere 88.8
1954 Female, age 42, unknown 85.3
2503 Female, age 72, unknown 74.2
2823 Male, age 76, right hemisphere 69.2
2725 Female, age 75, unknown 62.7
2584 Male, age 75, left hemisphere 59.4
Substantia nigra
nTPM: 43.6
2665 Male, age 74, both hemispheres 50.6
1889 Female, age 72, unknown 50.5
1851 Male, age 51, unknown 48.8
2590 Female, age 75, unknown 47.7
2583 Male, age 75, right hemisphere 47.4
2699 Male, age 18, unknown 42.3
1941 Male, age 53, unknown 40.3
1916 Female, age 42, unknown 39.5
2409 Female, age 72, unknown 35.7
2241 Male, age 72, unknown 33.1
Superior colliculus
nTPM: 52.2
1995 Male, age 72, unknown 76.1
2587 Male, age 74, left hemisphere 64.9
1913 Female, age 42, unknown 62.3
2668 Female, age 75, unknown 61.9
1839 Male, age 51, unknown 52.1
2664 Male, age 75, both hemispheres 46.2
2087 Female, age 72, unknown 43.6
1895 Male, age 76, right hemisphere 40.6
1796 Male, age 53, unknown 37.6
2261 Male, age 18, unknown 36.3
Ventral tegmental area
nTPM: 53.2
2223 Female, age 72, unknown 81.7
2021 Male, age 53, unknown 53.5
2410 Female, age 72, unknown 49.7
1942 Male, age 51, unknown 47.8
1915 Female, age 42, unknown 46.2
2218 Male, age 76, both hemispheres 40.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.3
Samples: 183

Max nTPM: 259.2
Min nTPM: 6.7
Std nTPM: 26.3
Median nTPM: 37.4
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 259.2
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 183.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 112.8
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 100.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 94.3
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 87.1
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 84.0
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 81.6
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 81.4
GTEX-1KD5A-0011-R2b-SM-G9EPP 50-59 years, male 81.2
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 80.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 43.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 43.1
FF:10158-103A5 76 years, female 43.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 21.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.6
Samples: 4

Max nTPM: 35.4
Min nTPM: 14.7
Sample A Female 17.5
Sample B Female 35.4
Sample C Male 14.7
Sample D Male 18.7
Midbrain
nTPM: 14.0
Samples: 4

Max nTPM: 20.4
Min nTPM: 11.2
Sample A Female 20.4
Sample B Female 13.0
Sample C Male 11.5
Sample D Male 11.2
Periaqueductal gray
nTPM: 12.9
Samples: 3

Max nTPM: 15.4
Min nTPM: 11.4
Sample B Female 11.4
Sample C Male 15.4
Sample D Male 12.0
Superior colliculi
nTPM: 21.1
Samples: 4

Max nTPM: 33.8
Min nTPM: 12.0
Sample A Female 21.9
Sample B Female 33.8
Sample C Male 12.0
Sample D Male 16.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 8.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 8.9
Samples: 4

Max nTPM: 9.8
Min nTPM: 8.0
Sample A Male 9.6
Sample B Male 8.1
Sample C Female 9.8
Sample D Female 8.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
69817763 Antisense, RP_050510_03_G02, Mouse strain C57BL/6J (56 days, male) 1.7
73521818 Antisense, RP_051101_03_B02, Mouse strain C57BL/6J (56 days, male) 1.4
70611102 Antisense, RP_050630_01_H11, Mouse strain C57BL/6J (56 days, male) 1.2
74822601 Antisense, RP_060321_02_G12, Mouse strain C57BL/6J (56 days, male) 0.3

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