MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:39.5 nTPM
HPA Brain:51.0 nTPM
GTEx:39.5 nTPM
FANTOM5:21.0 Scaled Tags Per Million
Pig:68.7 nTPM
Mouse:36.5 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 51.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.6
2666 Male, age 74, left hemisphere 49.1
2586 Male, age 75, left hemisphere 44.0
2828 Female, age 72, unknown 39.8
2219 Male, age 76, both hemispheres 39.0
1870 Female, age 42, unknown 35.4
2019 Male, age 18, unknown 34.8
1827 Male, age 72, unknown 34.5
1833 Male, age 53, unknown 31.5
1830 Male, age 51, unknown 30.0
2411 Female, age 72, unknown 28.3
Dorsal raphe nucleus
nTPM: 51.0
2047 Male, age 72, unknown 65.5
1828 Male, age 53, unknown 58.1
2298 Female, age 72, unknown 52.1
2016 Female, age 72, unknown 43.1
2750 Male, age 76, both hemispheres 36.1
Inferior colliculus
nTPM: 31.3
1890 Male, age 53, unknown 38.5
2097 Female, age 72, unknown 31.9
1848 Female, age 42, unknown 28.7
2849 Male, age 72, unknown 26.1
Median raphe nucleus
nTPM: 40.2
2220 Male, age 76, midline 40.2
Periaquaductal grey, anterior
nTPM: 40.9
1795 Male, age 51, unknown 45.9
1947 Male, age 18, unknown 42.6
2502 Female, age 75, unknown 34.1
Periaquaductal grey, dorsal
nTPM: 36.1
2850 Male, age 76, both hemispheres 48.8
1831 Male, age 72, unknown 36.0
2464 Female, age 72, unknown 30.5
1840 Male, age 53, unknown 29.0
Periaquaductal grey, lateral
nTPM: 38.2
2140 Male, age 76, both hemispheres 44.0
2053 Male, age 18, unknown 36.8
2272 Male, age 74, both hemispheres 33.7
Pretectal area
nTPM: 37.9
2007 Male, age 72, unknown 45.4
2224 Female, age 72, unknown 44.0
1816 Male, age 51, unknown 41.7
1817 Female, age 42, unknown 39.5
2316 Male, age 76, right hemisphere 38.2
2273 Male, age 74, both hemispheres 37.5
1944 Female, age 72, unknown 37.2
2825 Male, age 18, unknown 34.3
2407 Male, age 75, both hemispheres 34.2
1815 Male, age 53, unknown 33.6
2667 Female, age 75, unknown 31.1
Red nucleus
nTPM: 34.1
2725 Female, age 75, unknown 45.6
2584 Male, age 75, left hemisphere 39.5
2588 Male, age 74, left hemisphere 36.8
2785 Male, age 18, unknown 36.7
1821 Female, age 72, unknown 35.3
2227 Male, age 72, unknown 34.3
2823 Male, age 76, right hemisphere 32.6
1954 Female, age 42, unknown 31.9
2769 Male, age 72, unknown 30.8
1865 Male, age 51, unknown 29.6
1904 Male, age 53, unknown 28.1
2503 Female, age 72, unknown 27.9
Substantia nigra
nTPM: 41.2
1916 Female, age 42, unknown 56.4
2665 Male, age 74, both hemispheres 47.1
1851 Male, age 51, unknown 46.3
1941 Male, age 53, unknown 42.7
2583 Male, age 75, right hemisphere 40.3
2590 Female, age 75, unknown 38.2
2699 Male, age 18, unknown 37.5
2241 Male, age 72, unknown 36.0
1889 Female, age 72, unknown 35.3
2409 Female, age 72, unknown 32.2
Superior colliculus
nTPM: 37.8
2087 Female, age 72, unknown 47.7
2668 Female, age 75, unknown 42.6
2261 Male, age 18, unknown 41.8
1913 Female, age 42, unknown 37.6
1839 Male, age 51, unknown 36.9
2664 Male, age 75, both hemispheres 36.4
2587 Male, age 74, left hemisphere 36.3
1796 Male, age 53, unknown 35.9
1995 Male, age 72, unknown 35.1
1895 Male, age 76, right hemisphere 27.7
Ventral tegmental area
nTPM: 40.7
2021 Male, age 53, unknown 51.8
1915 Female, age 42, unknown 44.8
1942 Male, age 51, unknown 39.4
2218 Male, age 76, both hemispheres 38.0
2223 Female, age 72, unknown 36.4
2410 Female, age 72, unknown 33.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 39.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.5
Samples: 183

Max nTPM: 189.5
Min nTPM: 14.4
Std nTPM: 19.1
Median nTPM: 35.9
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 189.5
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 128.7
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 110.1
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 95.7
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 86.9
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 75.3
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 72.2
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 68.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 67.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 67.1
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 66.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 21.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 21.0
FF:10158-103A5 76 years, female 21.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 68.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 38.1
Samples: 4

Max nTPM: 61.1
Min nTPM: 25.6
Sample A Female 38.8
Sample B Female 61.1
Sample C Male 25.6
Sample D Male 26.7
Midbrain
nTPM: 29.1
Samples: 4

Max nTPM: 48.2
Min nTPM: 20.0
Sample A Female 48.2
Sample B Female 23.1
Sample C Male 25.2
Sample D Male 20.0
Periaqueductal gray
nTPM: 20.9
Samples: 3

Max nTPM: 24.1
Min nTPM: 19.3
Sample B Female 19.4
Sample C Male 24.1
Sample D Male 19.3
Superior colliculi
nTPM: 68.7
Samples: 4

Max nTPM: 166.8
Min nTPM: 26.0
Sample A Female 55.1
Sample B Female 166.8
Sample C Male 26.0
Sample D Male 26.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 36.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 36.5
Samples: 4

Max nTPM: 40.5
Min nTPM: 33.1
Sample A Male 40.5
Sample B Male 35.5
Sample C Female 33.1
Sample D Female 36.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
74821967 Antisense, RP_060321_02_F05, Mouse strain C57BL/6J (56 days, male) 0.3

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