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  • AP3S1
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:82.5 nTPM
HPA Brain:32.0 nTPM
GTEx:82.5 nTPM
FANTOM5:55.1 Scaled Tags Per Million
Pig:80.3 nTPM
Mouse:104.3 nTPM
Allen mouse:4.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

32.0
Sample id Sample description nTPM
Amygdala
nTPM: 32.0
2695 Female, age 67, right hemisphere 39.8
2514 Male, age 75, right hemisphere 33.1
2814 Male, age 76, right hemisphere 32.8
2517 Female, age 94, left hemisphere 28.1
1987 Female, age 91, left hemisphere 26.3
Basal amygdala
nTPM: 29.7
1955 Male, age 76, both hemispheres 33.2
2110 Male, age 80, left hemisphere 30.2
2685 Female, age 94, left hemisphere 29.9
2243 Female, age 91, right hemisphere 28.5
2609 Male, age 75, right hemisphere 28.0
2827 Female, age 67, right hemisphere 28.0
Central amygdala
nTPM: 30.6
2826 Female, age 94, left hemisphere 38.1
1905 Male, age 76, both hemispheres 31.4
2701 Female, age 91, right hemisphere 28.5
2239 Male, age 80, left hemisphere 28.1
2515 Male, age 75, right hemisphere 26.9
Corticomedial amygdala
nTPM: 30.5
2240 Male, age 76, both hemispheres 34.2
2429 Female, age 94, left hemisphere 33.7
2829 Male, age 80, left hemisphere 31.1
2428 Male, age 75, right hemisphere 30.5
2535 Female, age 67, right hemisphere 27.5
2242 Female, age 91, right hemisphere 25.9
Lateral amygdala
nTPM: 30.8
2534 Female, age 94, left hemisphere 36.9
1883 Male, age 76, both hemispheres 35.1
2830 Female, age 67, right hemisphere 34.7
2516 Male, age 75, right hemisphere 32.4
2256 Male, age 80, left hemisphere 24.3
2255 Female, age 91, right hemisphere 21.8

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

82.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 82.5
Samples: 181

Max nTPM: 229.6
Min nTPM: 43.1
Std nTPM: 21.8
Median nTPM: 80.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 229.6
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 173.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 139.4
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 126.7
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 126.1
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 121.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 115.1
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 114.8
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 114.1
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 113.7
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 113.5
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 111.7
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 111.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 110.3
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 107.8
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 107.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 107.7
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 107.4
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 107.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 106.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 106.2
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 105.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 103.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 102.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 101.3
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 101.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 101.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 100.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.3
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 99.6
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 99.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 99.6
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 98.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 98.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 97.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 97.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 95.6
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 95.4
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 95.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 94.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 94.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 94.1
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 93.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 93.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 93.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 93.0
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 92.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 92.2
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 92.2
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 92.1
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 92.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 90.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 90.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 89.9
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 89.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 89.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 89.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 89.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 89.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 89.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 88.7
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 88.3
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 87.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 87.1
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 86.9
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 86.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 86.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 85.7
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 85.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 84.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 84.4
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 84.4
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 84.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 84.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 84.0
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 83.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 83.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 83.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 82.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 82.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 82.6
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 82.5
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 82.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 82.2
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 82.0
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 81.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 81.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 81.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 81.2
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 80.2
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 79.8
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 79.5
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 79.4
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 79.3
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 79.2
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 78.7
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 78.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 78.6
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 78.5
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 78.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 77.5
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 77.3
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 77.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 76.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 76.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 76.2
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 74.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 74.7
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 74.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 74.1
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 73.7
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 73.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 73.4
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 73.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 72.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 72.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 72.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 72.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 72.3
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 72.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 71.1
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 71.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 71.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 70.8
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 70.5
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 70.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 70.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 69.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 69.7
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 69.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 68.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 68.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 68.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 68.2
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 67.5
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 67.4
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 67.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 66.5
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 66.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 66.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 66.1
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 65.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 65.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 64.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 63.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 63.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 63.5
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 63.2
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 63.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 62.9
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 62.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 62.3
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 62.1
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 61.8
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 61.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 61.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 61.4
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 61.3
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 61.2
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 60.7
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 60.5
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 60.3
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 59.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 59.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 59.0
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 58.2
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 55.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 55.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 54.5
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 54.0
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 53.4
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 52.1
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 51.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 50.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 47.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 45.4
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 43.1
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

55.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 55.1
FF:10151-102I7 76 years, female 55.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

80.3
Pig sample Sample description nTPM
Amygdala
nTPM: 80.4
Samples: 4

Max nTPM: 99.9
Min nTPM: 60.7
Sample A Female 99.9
Sample B Female 79.7
Sample C Male 81.1
Sample D Male 60.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

104.3
Mouse sample Sample description nTPM
Amygdala
nTPM: 104.4
Samples: 4

Max nTPM: 113.2
Min nTPM: 93.9
Sample A Male 93.9
Sample B Male 113.2
Sample C Female 109.0
Sample D Female 101.3

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.7
68301270 Antisense, RP_041129_02_H11, Mouse strain C57BL/6J (56 days, male) 6.0
73512483 Antisense, RP_051017_02_D02, Mouse strain C57BL/6J (56 days, male) 3.3

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