MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:24.3 nTPM
HPA Brain:62.4 nTPM
GTEx:24.3 nTPM
FANTOM5:24.3 Scaled Tags Per Million
Pig:58.5 nTPM
Mouse:31.0 nTPM
Allen mouse:0.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 62.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.2
2586 Male, age 75, left hemisphere 59.7
2019 Male, age 18, unknown 58.4
1827 Male, age 72, unknown 56.1
2219 Male, age 76, both hemispheres 49.9
2828 Female, age 72, unknown 48.5
2411 Female, age 72, unknown 45.5
1833 Male, age 53, unknown 42.3
1830 Male, age 51, unknown 41.6
2666 Male, age 74, left hemisphere 41.1
1870 Female, age 42, unknown 38.7
Dorsal raphe nucleus
nTPM: 46.1
2047 Male, age 72, unknown 50.9
2298 Female, age 72, unknown 48.0
2750 Male, age 76, both hemispheres 45.5
1828 Male, age 53, unknown 45.3
2016 Female, age 72, unknown 40.7
Inferior colliculus
nTPM: 47.2
2097 Female, age 72, unknown 51.4
2849 Male, age 72, unknown 47.6
1890 Male, age 53, unknown 46.5
1848 Female, age 42, unknown 43.3
Median raphe nucleus
nTPM: 62.4
2220 Male, age 76, midline 62.4
Periaquaductal grey, anterior
nTPM: 51.5
1795 Male, age 51, unknown 54.0
1947 Male, age 18, unknown 51.0
2502 Female, age 75, unknown 49.5
Periaquaductal grey, dorsal
nTPM: 46.5
1831 Male, age 72, unknown 49.3
1840 Male, age 53, unknown 47.7
2464 Female, age 72, unknown 44.7
2850 Male, age 76, both hemispheres 44.4
Periaquaductal grey, lateral
nTPM: 47.0
2272 Male, age 74, both hemispheres 50.5
2053 Male, age 18, unknown 47.1
2140 Male, age 76, both hemispheres 43.3
Pretectal area
nTPM: 61.3
1944 Female, age 72, unknown 83.2
1816 Male, age 51, unknown 83.0
2007 Male, age 72, unknown 77.1
1817 Female, age 42, unknown 72.5
1815 Male, age 53, unknown 71.4
2667 Female, age 75, unknown 62.6
2407 Male, age 75, both hemispheres 51.3
2224 Female, age 72, unknown 50.1
2273 Male, age 74, both hemispheres 46.7
2825 Male, age 18, unknown 41.2
2316 Male, age 76, right hemisphere 35.2
Red nucleus
nTPM: 44.9
2785 Male, age 18, unknown 55.6
2584 Male, age 75, left hemisphere 52.4
2588 Male, age 74, left hemisphere 50.2
2503 Female, age 72, unknown 48.0
2725 Female, age 75, unknown 47.3
1954 Female, age 42, unknown 44.4
1821 Female, age 72, unknown 44.0
1904 Male, age 53, unknown 42.1
2823 Male, age 76, right hemisphere 41.5
1865 Male, age 51, unknown 41.0
2227 Male, age 72, unknown 37.0
2769 Male, age 72, unknown 35.2
Substantia nigra
nTPM: 54.5
1889 Female, age 72, unknown 65.4
1916 Female, age 42, unknown 62.3
2583 Male, age 75, right hemisphere 56.1
2409 Female, age 72, unknown 54.7
1941 Male, age 53, unknown 54.4
2590 Female, age 75, unknown 53.4
2665 Male, age 74, both hemispheres 53.3
1851 Male, age 51, unknown 53.1
2241 Male, age 72, unknown 53.0
2699 Male, age 18, unknown 39.1
Superior colliculus
nTPM: 52.4
2261 Male, age 18, unknown 67.4
2087 Female, age 72, unknown 67.1
2664 Male, age 75, both hemispheres 55.5
1796 Male, age 53, unknown 54.5
2587 Male, age 74, left hemisphere 49.7
2668 Female, age 75, unknown 48.4
1839 Male, age 51, unknown 46.4
1895 Male, age 76, right hemisphere 46.4
1913 Female, age 42, unknown 44.7
1995 Male, age 72, unknown 44.1
Ventral tegmental area
nTPM: 49.5
2410 Female, age 72, unknown 56.0
2218 Male, age 76, both hemispheres 54.1
1915 Female, age 42, unknown 51.5
1942 Male, age 51, unknown 47.1
2021 Male, age 53, unknown 45.9
2223 Female, age 72, unknown 42.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 24.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 24.3
Samples: 183

Max nTPM: 47.9
Min nTPM: 9.2
Std nTPM: 7.1
Median nTPM: 23.9
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 47.9
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 45.3
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 43.5
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 42.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 42.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 42.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 41.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 40.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 39.8
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 39.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 38.8
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 24.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.3
FF:10158-103A5 76 years, female 24.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 58.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 53.2
Samples: 4

Max nTPM: 58.7
Min nTPM: 46.5
Sample A Female 57.8
Sample B Female 49.7
Sample C Male 58.7
Sample D Male 46.5
Midbrain
nTPM: 54.5
Samples: 4

Max nTPM: 59.7
Min nTPM: 42.1
Sample A Female 42.1
Sample B Female 56.7
Sample C Male 59.3
Sample D Male 59.7
Periaqueductal gray
nTPM: 52.2
Samples: 3

Max nTPM: 55.2
Min nTPM: 46.5
Sample B Female 55.2
Sample C Male 55.0
Sample D Male 46.5
Superior colliculi
nTPM: 58.5
Samples: 4

Max nTPM: 60.4
Min nTPM: 54.0
Sample A Female 60.0
Sample B Female 54.0
Sample C Male 60.4
Sample D Male 59.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 31.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 32.8
Min nTPM: 28.9
Sample A Male 28.9
Sample B Male 31.6
Sample C Female 32.8
Sample D Female 30.5

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.8
68301506 Antisense, RP_041130_01_D04, Mouse strain C57BL/6J (56 days, male) 0.8

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo