MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:169.5 nTPM
HPA Brain:68.8 nTPM
GTEx:169.5 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:241.9 nTPM
Mouse:22.5 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 68.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.3
2019 Male, age 18, unknown 81.8
2411 Female, age 72, unknown 75.3
1827 Male, age 72, unknown 69.0
1870 Female, age 42, unknown 63.4
2828 Female, age 72, unknown 55.5
2586 Male, age 75, left hemisphere 54.1
2666 Male, age 74, left hemisphere 51.3
1833 Male, age 53, unknown 51.1
2219 Male, age 76, both hemispheres 51.0
1830 Male, age 51, unknown 50.7
Dorsal raphe nucleus
nTPM: 65.3
2047 Male, age 72, unknown 73.4
2298 Female, age 72, unknown 69.8
1828 Male, age 53, unknown 64.9
2750 Male, age 76, both hemispheres 64.8
2016 Female, age 72, unknown 53.8
Inferior colliculus
nTPM: 61.3
2097 Female, age 72, unknown 71.5
1890 Male, age 53, unknown 69.5
1848 Female, age 42, unknown 58.5
2849 Male, age 72, unknown 45.8
Median raphe nucleus
nTPM: 65.3
2220 Male, age 76, midline 65.3
Periaquaductal grey, anterior
nTPM: 63.8
1795 Male, age 51, unknown 65.9
1947 Male, age 18, unknown 63.2
2502 Female, age 75, unknown 62.4
Periaquaductal grey, dorsal
nTPM: 53.6
1831 Male, age 72, unknown 55.7
2850 Male, age 76, both hemispheres 55.1
1840 Male, age 53, unknown 54.4
2464 Female, age 72, unknown 49.3
Periaquaductal grey, lateral
nTPM: 57.8
2053 Male, age 18, unknown 60.6
2272 Male, age 74, both hemispheres 58.0
2140 Male, age 76, both hemispheres 54.6
Pretectal area
nTPM: 68.0
2007 Male, age 72, unknown 84.9
1816 Male, age 51, unknown 83.0
1944 Female, age 72, unknown 77.2
1817 Female, age 42, unknown 73.2
2667 Female, age 75, unknown 68.5
1815 Male, age 53, unknown 66.4
2316 Male, age 76, right hemisphere 63.9
2224 Female, age 72, unknown 61.1
2273 Male, age 74, both hemispheres 60.5
2407 Male, age 75, both hemispheres 57.8
2825 Male, age 18, unknown 51.1
Red nucleus
nTPM: 68.8
1821 Female, age 72, unknown 88.5
2785 Male, age 18, unknown 71.0
2725 Female, age 75, unknown 70.9
1954 Female, age 42, unknown 69.0
2503 Female, age 72, unknown 68.9
1865 Male, age 51, unknown 68.8
2588 Male, age 74, left hemisphere 68.2
1904 Male, age 53, unknown 67.6
2823 Male, age 76, right hemisphere 64.7
2769 Male, age 72, unknown 63.0
2227 Male, age 72, unknown 62.7
2584 Male, age 75, left hemisphere 62.1
Substantia nigra
nTPM: 67.9
1916 Female, age 42, unknown 84.8
1851 Male, age 51, unknown 76.9
1889 Female, age 72, unknown 75.1
1941 Male, age 53, unknown 74.9
2409 Female, age 72, unknown 73.8
2241 Male, age 72, unknown 68.0
2590 Female, age 75, unknown 61.2
2699 Male, age 18, unknown 57.4
2665 Male, age 74, both hemispheres 56.9
2583 Male, age 75, right hemisphere 49.9
Superior colliculus
nTPM: 61.9
2587 Male, age 74, left hemisphere 70.6
2087 Female, age 72, unknown 70.2
1796 Male, age 53, unknown 67.2
2668 Female, age 75, unknown 65.5
2261 Male, age 18, unknown 63.8
1895 Male, age 76, right hemisphere 62.2
2664 Male, age 75, both hemispheres 56.8
1913 Female, age 42, unknown 56.1
1995 Male, age 72, unknown 55.3
1839 Male, age 51, unknown 51.7
Ventral tegmental area
nTPM: 65.9
1915 Female, age 42, unknown 72.1
2410 Female, age 72, unknown 72.0
2223 Female, age 72, unknown 71.8
2218 Male, age 76, both hemispheres 62.5
1942 Male, age 51, unknown 62.2
2021 Male, age 53, unknown 54.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 169.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 169.5
Samples: 183

Max nTPM: 319.5
Min nTPM: 79.5
Std nTPM: 42.3
Median nTPM: 163.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 319.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 289.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 281.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 281.5
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 257.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 256.0
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 253.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 250.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 249.7
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 249.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 248.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 63.8
FF:10158-103A5 76 years, female 63.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 241.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 229.6
Samples: 4

Max nTPM: 332.0
Min nTPM: 179.5
Sample A Female 332.0
Sample B Female 209.0
Sample C Male 179.5
Sample D Male 198.0
Midbrain
nTPM: 229.1
Samples: 4

Max nTPM: 333.5
Min nTPM: 159.7
Sample A Female 333.5
Sample B Female 233.9
Sample C Male 159.7
Sample D Male 189.2
Periaqueductal gray
nTPM: 187.5
Samples: 3

Max nTPM: 194.9
Min nTPM: 175.2
Sample B Female 175.2
Sample C Male 192.4
Sample D Male 194.9
Superior colliculi
nTPM: 241.9
Samples: 4

Max nTPM: 290.5
Min nTPM: 192.6
Sample A Female 290.5
Sample B Female 192.6
Sample C Male 233.7
Sample D Male 250.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 22.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 22.5
Samples: 4

Max nTPM: 27.2
Min nTPM: 19.3
Sample A Male 27.2
Sample B Male 21.1
Sample C Female 19.3
Sample D Female 22.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.6
69202388 Antisense, RP_050324_03_E11, Mouse strain C57BL/6J (56 days, male) 4.6

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